AT1G30620.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G20460.1); Has 42706 Blast hits to 42698 proteins in 2964 species: Archae - 775; Bacteria - 25859; Metazoa - 727; Fungi - 574; Plants - 1159; Viruses - 34; Other Eukaryotes - 13578 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10855496..10857970 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46214.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.42 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 418 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SFSRHEPGVT HVLVTGGAGY IGSHAALRLL KESYRVTIVD 101: NLSRGNLAAV RILQELFPEP GRLQFIYADL GDAKAVNKIF TENAFDAVMH FAAVAYVGES TQFPLKYYHN ITSNTLVVLE TMAAHGVKTL IYSSTCATYG 201: EPDIMPITEE TPQVPINPYG KAKKMAEDII LDFSKNSDMA VMILRYFNVI GSDPEGRLGE APRPELREHG RISGACFDAA RGIMPGLQIK GTDYKTADGT 301: CVRDYIDVTD LVDAHVKALQ KAKPRKVGIY NVGTGKGSSV KEFVEACKKA TGVEIKIDYL PRRAGDYAEV YSDPSKIRKE LNWTAKHTNL KESLETAWRW 401: QKLHRNGYGL TTSSVSVY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)