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AT1G28710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G28700.1); Has 346 Blast hits to 340 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 321; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
CAZy:GT77eggNOG:ENOG410IFG1eggNOG:ENOG410YCT3EMBL:AC007508EMBL:AY045852EMBL:AY091379EMBL:CP002684
EMBL:KJ138978EnsemblPlants:AT1G28710EnsemblPlants:AT1G28710.1EnsemblPlants:AT1G28710.3entrez:839771ExpressionAtlas:Q9FXJ4GeneID:839771
GO:GO:0016021GO:GO:0016740Gramene:AT1G28710.1Gramene:AT1G28710.3hmmpanther:PTHR24015hmmpanther:PTHR24015:SF817HOGENOM:HOG000238616
IntAct:Q9FXJ4InterPro:IPR005069OMA:HSECVKSPfam:PF03407PhylomeDB:Q9FXJ4Proteomes:UP000006548RefSeq:NP_001185108.1
RefSeq:NP_564315.1TAIR:AT1G28710TMHMM:TMhelixUniGene:At.16393UniProt:Q9FXJ4
Coordinates (TAIR10) chr1:-:10086850..10088025
Molecular Weight (calculated) 38875.50 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.15
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSFNSSGNL AVAVALLFAG ALYFYFSSIT VSDPMSDLLH NVETRWTEYP VDELEAVLDK AAMGNNKTVI IAMVNKAYVE EVEGGRTMLD LFLESFWEGE
101: GTRPLLDHLM LVAADQTSYD RCLFRRLHCY KMDTDGVDLE GEKVYMSKDF IEMMWRRTHL LLDVLSRGYN LTFTDTDVMW LRSPFPRLSY NESLDMQISV
201: DSIGLVGGHL INTGFYHVRS NNKTISLFQK WYDMRLKSTG MKEQDVLKSL LDSGFFNQLG LNVGFLNTTE FSGFCQDSHD MGVVTTVHAN CCRHILAKIS
301: DLTLVLRDWK RYKASHVNSN WSPHVECGRS WSDTHYIPKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)