AT1G24267.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.892 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1664) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G24265.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:8604451..8607241 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36906.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.16 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 344 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIPLGKLTI LIGAGLVGSV LAKEGSLPDV SSFVSGALKM VFRQLKQEEP AKSASKPRND TLMAQVNSLR HELSLLSSNR PITIVTTAGS GGKKYGYIII 101: IGVIGYGYVW WKGWKLPDLM FATRRSLSDA CNSVGSQIDG FYTSLSGTKK ELSSKIDGMG RSLDANTEII QDTGREVMEL QRGTENIKDD VKFVFDAVEN 201: LVRKLIYRIE GNQDITLKGV GALHAQVREN KRIQESNKAL PSTSAVPALE AAPMTPSSRT LSLPPASPRE SQSPSTSNGA QQSRGPLQHT QSMSGLKEIS 301: ENGTHSGETT GNTSSGLFSI FSIPRIGRTR SVVNTVPTNS IGPQ |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)