AT1G22660.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Polynucleotide adenylyltransferase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:8017410..8021538 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68701.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||
| Length | 603 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRLSSLPINT LINLPKSLFL ISPFRFRNLN RSLTVASRIS STLLRVSGVS SRPCGYWFST NAAMTNVGEE DKQSIPSIEL KENIELTDKE RKIFDRLLST 101: LRYCNLDTQL RVAGGWVRDK LLGKESDDID IAIDNMSGSE FLDKFKEYLS SRDEEVQGDT VIERNPDQSK HLETAKLRIY DQWIDFVNLR SEEYTENSRI 201: PTMKFGTAKD DAFRRDLTIN SLFYNINSGA VEDLTERGID DLKSGKIVTP LPAKATFLDD PLRVLRAVRF GARFGFTLDE ELKEAASSEE VRVALGEKIS 301: RERIGNEIDL MISGNGPVSA VTYLSDLKLF SVVFALPSSA EPSPPENCGS LSQSYLEAMW SLLKTPRPGK FSGEQRRLAL YAAMFLPFRK TVYKDTKGKS 401: IPVVNHIFKF SMKRKTSDAE TVMNIHQTTE RFRSLIPSLE VKKDVELDEL TWAADILEHW KSITLNDPVI PATSKIRVLT GFLLRDIKDF WRVSLLTSLL 501: LSATVDGSND HQDIGQLDFQ LERMRETYLT VEATIHELGL DKIWDAKPLV NGREIMQIAE LKGGSRLIRE WKLLTWQLAY PNGTAEECKE WMRDIKAKRQ 601: RIE |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)