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AT1G19600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.921
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pfkB-like carbohydrate kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT4G27600.1); Has 11746 Blast hits to 11745 proteins in 2087 species: Archae - 257; Bacteria - 7533; Metazoa - 331; Fungi - 90; Plants - 444; Viruses - 0; Other Eukaryotes - 3091 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0524eggNOG:KOG2854EMBL:AC024609EMBL:AC025808EMBL:AK227761EMBL:BT004821EMBL:CP002684
EnsemblPlants:AT1G19600EnsemblPlants:AT1G19600.1entrez:838547Gene3D:3.40.1190.20GeneID:838547GO:GO:0016301Gramene:AT1G19600.1
gramene_pathway:2.7.1.20gramene_pathway:PWY-6619hmmpanther:PTHR10584hmmpanther:PTHR10584:SF153HOGENOM:HOG000235949InterPro:IPR011611InterPro:IPR029056
KEGG:ath:AT1G19600OMA:QIPGERGPfam:PF00294PhylomeDB:Q9LN35PIR:F86328Proteomes:UP000006548RefSeq:NP_173390.1
SMR:Q9LN35STRING:3702.AT1G19600.1SUPFAM:SSF53613TAIR:AT1G19600UniGene:At.26831UniProt:Q9LN35
Coordinates (TAIR10) chr1:+:6779085..6780898
Molecular Weight (calculated) 37844.60 Da
IEP (calculated) 5.12
GRAVY (calculated) 0.02
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAEALPKCP EAPLVLGLQP AALIDNVAPV DWSLLDQIPG DRGGSIAVQK DELEHMLKEL DAHISVAPLK KMAGGSVTNT VRGLSVGFGV ATGIIGAYGD
101: DEQGQLFVSN MGFSGVSISR LRKKKGSTAQ CVCLVDDSGN RTMRPCLSSA VKIQADELSK EDFTGSKWLV LRYAVLNLQV IQAAIRFAKQ EGLSVSLDLA
201: SFEMVRNSKS ELRQLLESGN IDLCFANEDE AAELLRGEQE AGPEAALEFL GRHCRWAVVT LGSKGCIAKH DKEVVHISAI GETVATDATG AGDLFASGFL
301: YGLIKGLSLE ECCKVGSCSG GSVIRALGGE VTPENWQWMH KQLQLKGLPV PDIHN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)