AT1G18700.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.927 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 369 Blast hits to 369 proteins in 91 species: Archae - 2; Bacteria - 18; Metazoa - 191; Fungi - 18; Plants - 98; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6437591..6443046 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78591.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||
| Length | 695 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKETPASSS MPSGLKAYTV PIFLFVLAMF FQLFLLPRSF PPSHYDVLGV KMYSSVDDVK DAYQTVASKW DSGSGVSLPA DFVKIQYAYE LLTNLVWKRD 101: YDLYAIDESV HIIEELEKQY AVEDFAKIKL PLLEVVSYEP EREGFMSITS QDFASKFQDS KPWLIQVYSS GSNSSAQFAT VWRRIVALLD GVANHAMLEL 201: GDVQLVTYLA EKKPTGQVFF RKAMVYISER CNDYTLGFEG ELSADAITDW FATTVLGLPR VFYHTKETLV SKFLSKVPPN KVKVILFSQT GERATPIVRQ 301: AAKDYWNFAS LSHVLWREED ASFWWNALEV ESAPAIVIMK DPGSKPVVYH GSGNRTWFLD ILEQNKQLLL PQLRSTTSME LGCDARGYSR AGYDKVTWYC 401: AILVGRQSVE LNKMRETMCR VQDALSKYDD SDDASKDPSI TPAASAHKSK RLSFAWLDGE AQNKYCFFYV QSETSYDTCG TRRAPIDVPR ILIVRYHRNA 501: TETANAEQKS SKWPKTVWQS EADDVDPAAQ LVVSYDGTAE IPQIIKWLSK MVDDGDNRNL PFYRAKTPEL VPESAEPMRS GVPKTVKATQ KLLSLWNRIK 601: DYLADPRMGP TLLLGALLSA GNVWWMRSRS STQQPAQTNQ PSPNQPADNV EEKKKKERKR EQRRRNAKEE EVPASITDNE PKDAVQILSS GSDSD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)