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AT1G18200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A6B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A6B (RABA6b); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase (InterPro:IPR020851); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A6A (TAIR:AT1G73640.1); Has 27350 Blast hits to 27317 proteins in 747 species: Archae - 26; Bacteria - 153; Metazoa - 14378; Fungi - 3650; Plants - 3208; Viruses - 20; Other Eukaryotes - 5915 (source: NCBI BLink).
Protein Annotations
BioGrid:23638eggNOG:COG1100eggNOG:KOG0087EMBL:AC034107EMBL:AC069551EMBL:AK228658EMBL:CP002684
EnsemblPlants:AT1G18200EnsemblPlants:AT1G18200.1entrez:838399Gene3D:3.40.50.300GeneID:838399GO:GO:0005525GO:GO:0005622
GO:GO:0005886GO:GO:0007264GO:GO:0015031Gramene:AT1G18200.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF486HOGENOM:HOG000233968
InParanoid:Q0WQN4InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT1G18200OMA:VDFAYRNPaxDb:Q0WQN4
Pfam:PF00071Pfam:Q0WQN4Pfscan:PS51419PRIDE:Q0WQN4PRO:PR:Q0WQN4PROSITE:PS51419ProteinModelPortal:Q0WQN4
Proteomes:UP000006548RefSeq:NP_173258.2SMR:Q0WQN4STRING:3702.AT1G18200.1SUPFAM:SSF52540TAIR:AT1G18200tair10-symbols:AtRABA6b
tair10-symbols:RABA6bTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.22394UniProt:Q0WQN4
Coordinates (TAIR10) chr1:-:6265416..6266659
Molecular Weight (calculated) 25618.20 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.36
Length 229 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEESYDEEC DYLFKAVLIG DSAVGKSNLL SRFSRDEFRL DSKPTIGVDF AYRNVRVGDK TIKAQIWDTA GQERFRAITS SYYRGALGAL LIYDITRRIT
101: FKNIEKWLSE LRGFSSPETV VVLVGNKSDL GQSREVEEEE GKTLAESEGL YFLETSALEN QNVEEAFLSM IGRIHEVLTQ KIVLDNRLNG DGNNESNGAV
201: VPPGKEIVNI HEVTATRPLS TSLSNCCYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)