AT1G17460.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TRF-like 3 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana myb family transcription factor (At1g17460) | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRF-like 3 (TRFL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:5999519..6002546 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69196.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||
| Length | 624 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFGNVKDYGE TFQDSIFQTR NGSLSSTNQI GNPVTYKLVR VAGDGSLVPA TDEEMLEVKN LLEKNEQDMP VLPDPIQTEE YIPDEGSPSQ FLQLENFEGK 101: TYCIHAKTDR ISLGLHDKGF FQSETAGPYT ENLNSRHESK EELMNGSQML FVLPDTKFQI STELSGNVEL VPSKVLLQEP ILFSSNGCSI NQSTDVLNAT 201: ASPKEPALST AASKPDFSRV PGEISLANLS IKELQETFRA TFGRETTSKD KRWLKRRIKM GLINSCVVPT TTLTINDSKL IGGDQDAIDA FSKGTVDEET 301: ATESIDTPAS PDGIKGHSND FGHSPVETFV DHYSGNEDFE GEDGSAKRVR KPTRRYIEET NEKQQIDGSM IPSKDPSSIQ AVSSEGRVVV TRMVSLAGSR 401: IQVPYVSHVR RSRPRENIMA LGEFRSKSWE VKAAPEEGNL NLSPPQLSND VNRVPGVKSA SRCVQKESDK DHLKPIFTDV DQEMMEPELL DSSGDSSDDN 501: FVDAPITQSA SGRKLHRAWT ISEVEKLVEG VSKYGVGKWT EIKKLSFSPY THRTTVDLKD KWRNLQKASS SNRMEGGLKK HGSMAIPTHI MLQVRELAQK 601: QSPISRVVSK ARVVKRSRSR NGFL |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)