AT1G17130.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF572) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF572) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1391 Blast hits to 1324 proteins in 252 species: Archae - 3; Bacteria - 52; Metazoa - 454; Fungi - 341; Plants - 148; Viruses - 5; Other Eukaryotes - 388 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5854264..5856472 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38478.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.46 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.01 | ||||||||||||||||||||||||||||||||
| Length | 338 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGERKVLNKY YPPDFDPAKL QRLRRPKNQQ IKVRMMLPMS VRCGTCGNYI YKGTKFNSRK EDVIGENFSF DVQTYLGIQI FRFYFKCTKC SAELTMKTDP 101: QNSDYIVESG ASRNYEPWRA EDEEVDKDKQ KRDAEEMGDA MKSLENRTLD SKREMDIIAA LDEMKSMKSR HATVSVDAML EALQRTGAEK VKRIEEEDEA 201: VIKSIFGKQK EVIRRIADEE IDDDYDDDDI DDYPSLQKEK KGSSSDLSKK RKATEVSPSN PTDILTSSSA ENPKEPKKQA ISKQPFKSVH IKVIKKQPQP 301: TSSSTPAPAK PEEKKSDGAA NTSLASLFQN YGSDEDED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)