AT1G16020.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1712) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1712); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712, fungi (InterPro:IPR013176); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1); Has 188 Blast hits to 186 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 3; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5498633..5501018 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56325.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASMSSGDES LRLCMFDLRR GQTEGQELEK ILFFYPADLD FSTQLSVIGL SEGLITFTRL FSPEAACEVI EAERHSHVFY EAEPDIWMVM VVEKNKETGA 101: IWRIDALRRV LKEVHSLFVM FHGSIRALIE KEPTGGLTRS LLYPFITDYL SKFFVGKKLQ LPTFRETLRE RGTVQMLTLA RDTAVEVQSL VQVLDSCAGS 201: LRCHSMILFQ DLLVSTTLSA DDTVDLFTFA VMRLTSKALS SDTSSWSYLR KGPGSSEISS RSNLAPVGSI DSLHSRNGNN MHHVIRPLQN DKWTKGKDGF 301: LITDIWGLET GGSPDSAIPT IWLQQTQERM YLLAYQHKSL TLLLLMPTNA IVNGDLSISA VKQQVIEDAS LRILKIEENI SRGWGGENAY HIKGYRYLVV 401: DNDTKVSRSS PSGKVTTLAK ESLLALNKLR EEVDSEKSRA KGQEKDMEIC IRAKNNVWVI ARVTRGKELY MALEKGSDTL LDTTDAVGRF SNRYCSGAFL 501: MD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)