AT1G15400.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : | ||||||||
| Curator Summary (TAIR10) |
|||||||||
| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr1:-:5296402..5296824 | ||||||||
| Molecular Weight (calculated) | 15302.00 Da | ||||||||
| IEP (calculated) | 11.15 | ||||||||
| GRAVY (calculated) | -1.29 | ||||||||
| Length | 140 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGLQRSTIS FRRQGSSGIV FDDRLIAELN KSGNNEQKDE SQRDEQPKPM SESSEQVKPI DEKDKLRPIK TGGGAPGGIE RSRSNGGGAQ RHHRTTGRVS 101: PAVDPPSPRI SSCGCCSAFG KNPPGKKVNP RKRPPKRRSR |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)