AT1G13220.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nuclear matrix constituent protein-related | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei3 (TAIR:AT1G68790.1); Has 343402 Blast hits to 148924 proteins in 3995 species: Archae - 3820; Bacteria - 73706; Metazoa - 134029; Fungi - 26703; Plants - 17784; Viruses - 1471; Other Eukaryotes - 85889 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4515699..4520071 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129931.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1128 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTPRSETHKI GGVTNPRNAD RKGKAVAFSD DLVIPTLPPP PIGTLTGQGV SRGHTDDMDM GDWRRFREVG LLNEASMEKK DQEALLEKIS TLEKELYGYQ 0101: HNMGLLLMEN KELVSKHEQL NQAFQEAQEI LKREQSSHLY ALTTVEQREE NLRKALGLEK QCVQELEKAL REIQEENSKI RLSSEAKLVE ANALVASVNG 0201: RSSDVENKIY SAESKLAEAT RKSSELKLRL KEVETRESVL QQERLSFTKE RESYEGTFQK QREYLNEWEK KLQGKEESIT EQKRNLNQRE EKVNEIEKKL 0301: KLKEKELEEW NRKVDLSMSK SKETEEDITK RLEELTTKEK EAHTLQITLL AKENELRAFE EKLIAREGTE IQKLIDDQKE VLGSKMLEFE LECEEIRKSL 0401: DKELQRKIEE LERQKVEIDH SEEKLEKRNQ AMNKKFDRVN EKEMDLEAKL KTIKEREKII QAEEKRLSLE KQQLLSDKES LEDLQQEIEK IRAEMTKKEE 0501: MIEEECKSLE IKKEEREEYL RLQSELKSQI EKSRVHEEFL SKEVENLKQE KERFEKEWEI LDEKQAVYNK ERIRISEEKE KFERFQLLEG ERLKKEESAL 0601: RVQIMQELDD IRLQRESFEA NMEHERSALQ EKVKLEQSKV IDDLEMMRRN LEIELQERKE QDEKDLLDRM AQFEDKRMAE LSDINHQKQA LNREMEEMMS 0701: KRSALQKESE EIAKHKDKLK EQQVEMHNDI SELSTLSINL KKRREVFGRE RSRFLAFVQK LKDCGSCGQL VNDFVLSDLQ LPSNDEVAIL PPIGVLNDLP 0801: GSSNASDSCN IKKSLDGDAS GSGGSRRPSM SILQKCTSII FSPSKRVEHG IDTGKPEQRL SSSVAVGMET KGEKPLPVDL RLRPSSSSIP EEDEEYTDSR 0901: VQETSEGSQL SEFQSSRRGR GRPRKAKPAL NPTSSVKHAS LEESSKDELS GHVSVTSKKT TGGGGRKRQH IDDTATGGKR RRQQTVAVLP QTPGQRHYNL 1001: RRKKTVDQVP ADVEDNAAAG EDDADIAASA PSKDTVEETV VETLRARRIE TNADVVSAEN NGDVPVANVE PTVNEDTNED GDEEEDEAQD DDNEENQDDD 1101: DDDDGDDDGS PRPGEGSIRK KLWTFLTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)