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AT1G12570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glucose-methanol-choline (GMC) oxidoreductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 10555 Blast hits to 10382 proteins in 1112 species: Archae - 4; Bacteria - 3926; Metazoa - 806; Fungi - 1507; Plants - 299; Viruses - 12; Other Eukaryotes - 4001 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12570-MONOMEReggNOG:COG2303eggNOG:KOG1238EMBL:BT015417EMBL:CP002684EnsemblPlants:AT1G12570EnsemblPlants:AT1G12570.1
entrez:837814Gene3D:3.50.50.60GeneID:837814GO:GO:0016614GO:GO:0050660Gramene:AT1G12570.1hmmpanther:PTHR11552
hmmpanther:PTHR11552:SF141HOGENOM:HOG000239349InterPro:IPR000172InterPro:IPR007867InterPro:IPR012132InterPro:IPR023753KEGG:00260+1.2.1.8+1.1.99.1
KEGG:ath:AT1G12570OMA:HRILFRTPfam:PF00732Pfam:PF05199PhylomeDB:Q66GI5PIRSF:PIRSF000137PROSITE:PS00624
Proteomes:UP000006548RefSeq:NP_172718.2scanprosite:PS00624SMR:Q66GI5STRING:3702.AT1G12570.1SUPFAM:SSF51905SUPFAM:SSF54373
TAIR:AT1G12570UniGene:At.15267unipathway:UPA00529UniProt:Q66GI5
Coordinates (TAIR10) chr1:-:4278192..4280753
Molecular Weight (calculated) 62004.00 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.18
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDRFWSWRL FVALSLFLHS PICSSDKAPN YSFMRDATGS PTTSYYDYII IGGGTAGCPL AATLSQNASV LLLERGDSPY NNPNITRLSA FGAALSDLSE
101: SSPSQRFVSE DGVINARARV LGGGSALNAG FYTRAGTKYV RNMGWDGALA NESYQWVEAK VAFQPPMGRW QTAVRDGLLE AGIVPNNGFT YDHINGTKFG
201: GTIFDRNGNR HTAADLLEYA DPKGITVLLH ATVHRILFRT RGTTKPIANG VVYRDRTGQA HRAYLKEGAL SEIILSAGTL GSPQLLMLSG VGPSAQLQAQ
301: NITVVMDQPH VGQGMYDNPM NAVFVPSPVP VEVSLIEVVG ITGEGTYVEA AGGENFGGGG GGSSGSSSTR DYYAMFSPRA TLLESNSMTK LSSAQPFQGG
401: FLLEKVMGPL STGHLELKTR NPKDNPIVTF NYFQHPDDLK RCVRGIQTIE RVVQSKAFSR YKYADVSFEY LLNLTASTPV NLRPPRSGPG ASLPPSAEEF
501: CQHTVTTIWH YHGGCVVGRV VDGDYKVIGI DRLRVIDMST VGYCPGTNPQ ATVMMLGRYM GVKILRERLT KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)