AT1G12570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glucose-methanol-choline (GMC) oxidoreductase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 10555 Blast hits to 10382 proteins in 1112 species: Archae - 4; Bacteria - 3926; Metazoa - 806; Fungi - 1507; Plants - 299; Viruses - 12; Other Eukaryotes - 4001 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4278192..4280753 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62004.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMDRFWSWRL FVALSLFLHS PICSSDKAPN YSFMRDATGS PTTSYYDYII IGGGTAGCPL AATLSQNASV LLLERGDSPY NNPNITRLSA FGAALSDLSE 101: SSPSQRFVSE DGVINARARV LGGGSALNAG FYTRAGTKYV RNMGWDGALA NESYQWVEAK VAFQPPMGRW QTAVRDGLLE AGIVPNNGFT YDHINGTKFG 201: GTIFDRNGNR HTAADLLEYA DPKGITVLLH ATVHRILFRT RGTTKPIANG VVYRDRTGQA HRAYLKEGAL SEIILSAGTL GSPQLLMLSG VGPSAQLQAQ 301: NITVVMDQPH VGQGMYDNPM NAVFVPSPVP VEVSLIEVVG ITGEGTYVEA AGGENFGGGG GGSSGSSSTR DYYAMFSPRA TLLESNSMTK LSSAQPFQGG 401: FLLEKVMGPL STGHLELKTR NPKDNPIVTF NYFQHPDDLK RCVRGIQTIE RVVQSKAFSR YKYADVSFEY LLNLTASTPV NLRPPRSGPG ASLPPSAEEF 501: CQHTVTTIWH YHGGCVVGRV VDGDYKVIGI DRLRVIDMST VGYCPGTNPQ ATVMMLGRYM GVKILRERLT KK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)