AT1G05960.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Uncharacterized protein (TAIR:AT2G41830.1); Has 335 Blast hits to 327 proteins in 101 species: Archae - 0; Bacteria - 6; Metazoa - 143; Fungi - 47; Plants - 128; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1808478..1815060 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111449.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.50 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||
| Length | 1003 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGVMSRRVLP ACGNLCFFCP SLRARSRHPV KRYKKMLAEI FPRNQEAEPN DRKIGKLCEY ASRNPLRIPK ITEYLEQKCY KELRNGNIGS VKVVLCIYKK 0101: LLSSCKEQIS SEIMLTFFFL VARSFTFEFL PLFSCSLLSI VRTLLEQTKE EEVQILGCNT LVDFISLQTV NSHMFNLEGL IPKLCQLAQE MGDDERSLQL 0201: RSAGMQALAF MVSFIGEHSQ LSMDLDMIIS VILENYMDLE KGQEDTKEVD QISDTKIPNM TKKVSFKPNP VTDYKLENMD ISKSPSYWSM VCLCNIAKLA 0301: KETTTVRRVL EPLLTAFDSG DYWSPQKGVA SSVLLFLQSR LEESGENCHV LVSSLIKHLD HKNVIKQQGL QINMVNVATC LALHAKQQAS GAMTAVIADL 0401: IKHLRKCLQN AAESDVSVDK TKQNSDLQHA LENCIAELSN KVGDAGPILD MFAVVLETIS TNVVLSRTTA SAILRAAHIV SVVPNVSYHK KVFPDALFHQ 0501: LLLAMSHADC TTRVEAHNIF SVVLLGTLRL PWSDQHKETS EAVSGSLSVD GICTVRNQEE EKEKVEKSLN SELCKDVNHI SRPSVSGQTS QQLSCQSLDS 0601: LKDLDDGIKS LCSLRLSSHQ VNMLLSSLWI QATSTDNTPE NFEAMASTYQ ITLLFSLAKR SNHMALVQCF QLAFSLRNLS LNQDGGMQHS RRRSIFTFAS 0701: YMLIFGAKIS NILELVPIIK ESLTAQMVDP YLVLEGDIRL RAVCSGFPQE ETYGSDKDDS AALNSSVIVT DDRRLKEIVI THFTSKLQTL SEEEQLNLRK 0801: EIQSDFSLDD AHSLGGQLFT DTPGPSSPLN QTELPAFEEV ELSDIAAFEG ISPGASGSQS GHRTSLSTNT NPVDVLSVNE LLESVSETAR QVASLPVSSI 0901: PVPYDQMMNQ CEALVTGKQQ KMSVLRSFKP QATKAITSED NEKDEQYLLK ETEEAGEDDE KAIIVADVQP QGQLGFFSQE VPQNSFRLPP SSPYDKFLKA 1001: AGC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)