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AT1G05580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21239645 (2011): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : cation/H+ exchanger 23
Curator
Summary (TAIR10)
member of Putative Na+/H+ antiporter family
Computational
Description (TAIR10)
cation/H+ exchanger 23 (CHX23); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, leaf; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 21 (TAIR:AT2G31910.1); Has 6204 Blast hits to 6178 proteins in 1654 species: Archae - 257; Bacteria - 4841; Metazoa - 0; Fungi - 132; Plants - 575; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).
Protein Annotations
BioGrid:22305eggNOG:COG0475eggNOG:KOG1650EMBL:AC007153EMBL:AY072159EMBL:AY096415EMBL:AY926477
EMBL:CP002684EnsemblPlants:AT1G05580EnsemblPlants:AT1G05580.1entrez:837063GeneID:837063GO:GO:0005451GO:GO:0005783
GO:GO:0005789GO:GO:0006814GO:GO:0006885GO:GO:0010183GO:GO:0016021GO:GO:0031969GO:GO:0071805
GO:GO:1902600hmmpanther:PTHR32468hmmpanther:PTHR32468:SF15HOGENOM:HOG000131548InParanoid:Q8VYD4InterPro:IPR006153InterPro:IPR030153
KEGG:ath:AT1G05580OMA:IMNDECKPANTHER:PTHR32468:SF15PaxDb:Q8VYD4Pfam:PF00999Pfam:Q8VYD4PhylomeDB:Q8VYD4
PIR:G86189PRIDE:Q8VYD4PRO:PR:Q8VYD4ProteinModelPortal:Q8VYD4Proteomes:UP000006548RefSeq:NP_001030975.1RefSeq:NP_172049.2
STRING:3702.AT1G05580.1TAIR:AT1G05580tair10-symbols:ATCHX23tair10-symbols:CHX23TCDB:2.A.37.4.5TMHMM:TMhelixUniGene:At.42390
UniProt:Q8VYD4
Coordinates (TAIR10) chr1:-:1665594..1668794
Molecular Weight (calculated) 95873.00 Da
IEP (calculated) 6.44
GRAVY (calculated) 0.25
Length 867 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSGAPLNVT NPNYDIEESR FGKIVCYDQS LLFEKREQKG WESGSTLASS LPFFITQLFV ANLSYRVLYY LTRPLYLPPF VAQILCGLLF SPSVLGNTRF
101: IIAHVFPYRF TMVLETFANL ALVYNIFLLG LGMDLRMVRI TELKPVIIAF TGLLVALPVG AFLYYLPGNG HPDKIISGCV FWSVALACTN FPDLARILAD
201: LKLLRSDMGR TAMCAAIVTD LCTWVLLVFG FASFSKSGTW NKMMPFVIIT TAIFVLLCIF VIRPGIAWIF AKTVKAGHVG DTHVWFILGG VVLCGLITDA
301: CGVHSITGAF LFGLSIPHDH IIRNMIEEKL HDFLSGILMP LFYIICGLRA DIGFMLQFTD KFMMVVVICS SFLVKIVTTV ITSLFMHIPM RDAFAIGALM
401: NTKGTLSLVV LNAGRDTKAL DSPMYTHMTI ALLVMSLVVE PLLAFAYKPK KKLAHYKHRT VQKIKGETEL RVLACVHVLP NVSGITNLLQ VSNATKQSPL
501: SVFAIHLVEL TGRTTASLLI MNDECKPKAN FSDRVRAESD QIAETFEAME VNNDAMTVQT ITAVSPYATM HEDICVLAED KRVCFIILPY HKHLTPDGRM
601: GEGNSSHAEI NQNVLSHAPC SVGILVDRGM AMVRSESFRG ESMKREVAML FVGGPDDREA LSYAWRMVGQ HVIKLTVVRF VPGREALISS GKVAAEYERE
701: KQVDDECIYE FNFKTMNDSS VKYIEKVVND GQDTIATIRE MEDNNSYDLY VVGRGYNSDS PVTAGLNDWS SSPELGTIGD TLASSNFTMH ASVLVIQQYS
801: ATKRQAAVTA AAATTVMGAV AGVTGNNLES AGGDAKMTRD AHEPFMKSMY EDEDEDDEED HQYGIHR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)