suba logo
AT1G04635.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.865
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ribonuclease P family protein / Rpp14 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 1687 (EMB1687); FUNCTIONS IN: ribonuclease activity, ribonuclease P activity; INVOLVED IN: tRNA processing, embryo development ending in seed dormancy; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Ribonuclease P-related (InterPro:IPR002759); Has 266 Blast hits to 266 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 108; Plants - 56; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:24695DNASU:839460EC:3.1.26.5eggNOG:COG1369eggNOG:KOG4639EMBL:AC002376EMBL:BT015147
EMBL:BT015896EMBL:CP002684EnsemblPlants:AT1G04635EnsemblPlants:AT1G04635.1entrez:839460GeneID:839460GO:GO:0004526
GO:GO:0005730GO:GO:0005773GO:GO:0008033GO:GO:0009249Gramene:AT1G04635.1hmmpanther:PTHR10993HOGENOM:HOG000006304
InParanoid:Q6AWV1InterPro:IPR002759InterPro:IPR016819KEGG:ath:AT1G04635KO:K03537OMA:LECDEAKPaxDb:Q6AWV1
Pfam:PF01900Pfam:Q6AWV1PhylomeDB:Q6AWV1PIR:B86179PIRSF:PIRSF023803PRO:PR:Q6AWV1ProteinModelPortal:Q6AWV1
Proteomes:UP000006548RefSeq:NP_683274.1STRING:3702.AT1G04635.1SUPFAM:SSF160350TAIR:AT1G04635tair10-symbols:EMB1687UniGene:At.49851
UniProt:Q6AWV1
Coordinates (TAIR10) chr1:+:1291350..1291805
Molecular Weight (calculated) 17017.90 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.03
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGFKNRYML MEVFLDPDKD LLGEGTPIIL TQFNLSKAIK DSILVNFGEC GLGSSLGSFQ VKYVNPITKL CIVRSSREEH RQVWLAITLV KSIGNCPVIL
101: NLLDISGCIR ACRDTALKCD KEKFEQCSKS LSEEEIRQMN TSLEKIKLLE N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)