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AT1G71430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3M4eggNOG:ENOG410XYP1EMBL:AC016163EMBL:AK117819
EMBL:BT003686EMBL:CP002684EnsemblPlants:AT1G71430EnsemblPlants:AT1G71430.1
entrez:843484GeneID:843484Gramene:AT1G71430.1hmmpanther:PTHR28674
IntAct:Q9C9I0InterPro:IPR027921KEGG:ath:AT1G71430OMA:MEGKENC
Pfam:PF15370PhylomeDB:Q9C9I0Proteomes:UP000006548RefSeq:NP_565016.1
STRING:3702.AT1G71430.1TAIR:AT1G71430UniGene:At.35185UniGene:At.48359
UniProt:Q9C9I0
Coordinates (TAIR10) chr1:+:26920564..26921058
Molecular Weight (calculated) 17304.40 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.58
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKENCKDL LKLELKNPSS SSAMDSALLM CTDKNKKKKK MEAPPPSKPT IAPVPKSQLL GKLKGFLGVM AEANKKSEAN PEAYNIEALT GNESELIEMD
101: LMLGVADLNT PEAVSAAEAA IAGIGPAAES GDSSSDDESD SESEGEESKS AECSRKRSKI IELS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)