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AT1G03790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).
Computational
Description (TAIR10)
SOMNUS (SOM); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G44260.1); Has 3270 Blast hits to 1059 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 444; Fungi - 30; Plants - 421; Viruses - 3; Other Eukaryotes - 2372 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR0ZeggNOG:KOG1595EMBL:AC003027EMBL:AK117219EMBL:BT005342EMBL:CP002684EnsemblPlants:AT1G03790
EnsemblPlants:AT1G03790.1entrez:839408Gene3D:4.10.1000.10GeneID:839408Genevisible:Q9ZWA1GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0010187GO:GO:0046872Gramene:AT1G03790.1hmmpanther:PTHR14493
hmmpanther:PTHR14493:SF53HOGENOM:HOG000237601InParanoid:Q9ZWA1InterPro:IPR000571KEGG:ath:AT1G03790OMA:NANISWLPaxDb:Q9ZWA1
Pfam:PF00642Pfam:Q9ZWA1Pfscan:PS50103PhylomeDB:Q9ZWA1PIR:D86168PRIDE:Q9ZWA1PRO:PR:Q9ZWA1
PROSITE:PS50103ProteinModelPortal:Q9ZWA1Proteomes:UP000006548RefSeq:NP_171875.1SMART:SM00356SMR:Q9ZWA1STRING:3702.AT1G03790.1
SUPFAM:SSF90229TAIR:AT1G03790tair10-symbols:SOMUniGene:At.43010UniProt:Q9ZWA1
Coordinates (TAIR10) chr1:+:954589..955770
Molecular Weight (calculated) 43616.60 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.72
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVVCTEHQM RKPTVEIPPR KLLLSSKSFP SDSSSPRSPR KHNWNKSNKI TSEHEEDNED NNRENKEYCY DSDSDDPYAS DHFRMFEFKI RRCTRSRSHD
101: WTDCPFAHPG EKARRRDPRR FQYSGEVCPE FRRGGDCSRG DDCEFAHGVF ECWLHPIRYR TEACKDGKHC KRKVCFFAHS PRQLRVLPPE NVSGVSASPS
201: PAAKNPCCLF CSSSPTSTLL GNLSHLSRSP SLSPPMSPAN KAAAFSRLRN RAASAVSAAA AAGSMNYKDV LSELVNSLDS MSLAEALQAS SSSPVTTPVS
301: AAAAAFASSC GLSNQRLHLQ QQQPSSPLQF ALSPSTPSYL TNSPQANFFS DDFTPRRRQM NDFTAMTAVR ENTNIEDGSC GDPDLGWVND LLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)