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AT5G62730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 6918 Blast hits to 6790 proteins in 1275 species: Archae - 0; Bacteria - 3368; Metazoa - 483; Fungi - 402; Plants - 2165; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AB009053EMBL:CP002688
EnsemblPlants:AT5G62730EnsemblPlants:AT5G62730.1entrez:836394GeneID:836394
Genevisible:Q9FM20GO:GO:0005215GO:GO:0016021Gramene:AT5G62730.1
hmmpanther:PTHR11654hmmpanther:PTHR11654:SF184HOGENOM:HOG000237400InParanoid:Q9FM20
InterPro:IPR000109InterPro:IPR020846KEGG:ath:AT5G62730OMA:AHEHSTE
PANTHER:PTHR11654PaxDb:Q9FM20Pfam:PF00854Pfam:Q9FM20
PhylomeDB:Q9FM20PRIDE:Q9FM20PRO:PR:Q9FM20ProteinModelPortal:Q9FM20
Proteomes:UP000006548RefSeq:NP_201079.1SMR:Q9FM20STRING:3702.AT5G62730.1
SUPFAM:SSF103473TAIR:AT5G62730TMHMM:TMhelixUniGene:At.29036
UniProt:Q9FM20
Coordinates (TAIR10) chr5:+:25197494..25200033
Molecular Weight (calculated) 65246.40 Da
IEP (calculated) 8.57
GRAVY (calculated) 0.37
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTNYTAINH ILHFHSPNSC FLMIMSLEFE QMDEANRLSA WNGYVDWRSR PALRGRHGGM LAASFVLVVE VLENLAFLAN ASNLVLYLST KMGFSPSGAA
101: NAVTAFMGTA FFLALLGGFL ADAFFTTFHI YLVSAAIEFL GLMVLTVQAH EHSTEPWSRV FLFVGLYLVA LGVGGIKGSL PPHGAEQFDE ETSSGRRQRS
201: FFFNYFIFSL SCGALIAVTV VVWLEDNKGW SYGFGVSTAA ILISVPVFLA GSRVYRLKVP SGSPITTLFK VLTAALYAKY KKRRTSRIVV TCHTRNDCDD
301: SVTKQNCDGD DGFLGSFLGE VVRERESLPR PLRCTEEQVK DVKIVIKILP IFMSTIMLNC CLAQLSTFSV QQASTMNTKL GSFTVPPAAL PVFPVVFMMI
401: LAPTYNHLLL PLARKSTKTE TGITHLQRIG TGLVLSIVAM AVAALVETKR KHVVVSCCSN NNSSSYSSSP LPITFLWVAI QYVFLGSADL FTLAGMMEFF
501: FTEAPSTMRS LATSLSWASL AMGYYFSSVL VSAVNFVTGL NHHNPWLLGE NLNQYHLERF YWLMCVLSGI NFLHYLFWAS RYVYRSNQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)