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AT5G60820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G08139.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AB015472EMBL:CP002688
EnsemblPlants:AT5G60820EnsemblPlants:AT5G60820.1entrez:836203Gene3D:3.30.40.10
GeneID:836203GO:GO:0008270Gramene:AT5G60820.1hmmpanther:PTHR22763
hmmpanther:PTHR22763:SF88HOGENOM:HOG000148336InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT5G60820ncoils:CoilOMA:NEEDEYVPfam:PF13639
Pfscan:PS50089PhylomeDB:Q9FJH4PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_200890.1SMART:SM00184SMR:Q9FJH4SUPFAM:SSF57850
TAIR:AT5G60820UniGene:At.43736UniProt:Q9FJH4
Coordinates (TAIR10) chr5:+:24469636..24470895
Molecular Weight (calculated) 47705.90 Da
IEP (calculated) 3.65
GRAVY (calculated) -0.57
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEMSYLQID DANDAVFNHY RHQRRLHDHL RDQSFSQILY PLPHWIQSDD GDLYISETDF SSGDVSVSDL VFTTDDGLDL LDRRSFVMDL FHQRVEQSQV
101: TPLDNDGIDD FENYEMREDN VELDFGLEME SGNGFVDSDL VVNLNEHVDG MRLLGIESGD VIVTVESCFD SDDEDDQEKE ESEIWGIDLN EEDEYVNDDD
201: DNDDEEEDAS VTIPLCWDSL QLEDLGINNE DCEWEEVDSD DEREVLSVLA EADDNNSVSV SVAATISLED LAISERRGSS NLGWEVLLNS RSLEFNLDDA
301: ESNLELYIGD IDHEEEDYED YLHTTEYEML FEAEISSGIG KPPASKSFIK NLKVSPLSNE DVMENDDDAV CCAVCKEEMI VGKEVAELPC RHKYHSECIV
401: PWLGIRNTCP VCRFELPSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)