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AT5G60570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.552
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G26930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21422eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AB011483EMBL:AK221729EMBL:BT029765EMBL:CP002688
EnsemblPlants:AT5G60570EnsemblPlants:AT5G60570.1entrez:836178Gene3D:2.130.10.80GeneID:836178Genevisible:Q9FKJ0GO:GO:0005634
Gramene:AT5G60570.1hmmpanther:PTHR24413hmmpanther:PTHR24413:SF133HOGENOM:HOG000239488InParanoid:Q9FKJ0IntAct:Q9FKJ0InterPro:IPR001810
InterPro:IPR006652InterPro:IPR015916iPTMnet:Q9FKJ0KEGG:ath:AT5G60570OMA:LEYSTNMPaxDb:Q9FKJ0Pfam:PF01344
Pfam:Q9FKJ0PhylomeDB:Q9FKJ0PRIDE:Q9FKJ0PRO:PR:Q9FKJ0ProteinModelPortal:Q9FKJ0Proteomes:UP000006548RefSeq:NP_200865.1
SMART:SM00612SMR:Q9FKJ0STRING:3702.AT5G60570.1SUPFAM:0052715SUPFAM:SSF81383TAIR:AT5G60570UniGene:At.43004
UniProt:Q9FKJ0
Coordinates (TAIR10) chr5:+:24348713..24349894
Molecular Weight (calculated) 43715.80 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.15
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAEEHSNKR REVSASASAS ASASVVVNLR VGEEDNDGHR LRLGSSDSVL PGLIDDVALN CLAWVPRSDY PSLSCVNKKY NKLINSGHLF ALRKELGIVE
101: YLVFMVCDPR GWLMFSPMKK KWMVLPKMPC DECFNHADKE SLAVDDELLV FGRELFQFAI WKYSLRSRCW VKCEGMHRPR CLFASGSLGG IAIVAGGTDM
201: NGNILASAEL YDSSSGRWEM LPNMHSPRRL CSGFFMDGKF YVIGGMSSPN VSVTFGEEFD LETRKWRKIE GMYPNVNRAA QAPPLVVVVN NELFTLEYST
301: NMVKKYDKVK NKWEVMGRLP PMVDSSNGWG LAFKPCGDQL LVFCGQRGPH GEGIVVNSWC PKSGAKDGNL DWKVLGVKEN VGVFVYNCAV MGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)