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AT5G55730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 16618929
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 12805588
TAIR : plasma membrane 16618929
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30447334 (2019): plasma membrane
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24393051 (2015): extracellular region
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18998720 (2009): extracellular region
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan 1
Curator
Summary (TAIR10)
fasciclin-like arabinogalactan-protein 1 (Fla1)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan 1 (FLA1); LOCATED IN: anchored to plasma membrane, cell wall, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan 2 (TAIR:AT4G12730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEBJeggNOG:ENOG4111EHGEMBL:AB009050EMBL:AF333970
EMBL:AY088827EMBL:BT002537EMBL:BT008510EMBL:CP002688
EnsemblPlants:AT5G55730EnsemblPlants:AT5G55730.1EnsemblPlants:AT5G55730.2entrez:835667
Gene3D:2.30.180.10GeneID:835667Genevisible:Q9FM65GO:GO:0005618
GO:GO:0005886GO:GO:0031225GO:GO:0046658GO:GO:0048364
GO:GO:0048367Gramene:AT5G55730.1Gramene:AT5G55730.2hmmpanther:PTHR32382
hmmpanther:PTHR32382:SF4HOGENOM:HOG000240961InParanoid:Q9FM65InterPro:IPR000782
InterPro:IPR033254iPTMnet:Q9FM65KEGG:ath:AT5G55730OMA:TGIMSAH
PANTHER:PTHR32382PaxDb:Q9FM65Pfam:PF02469Pfam:Q9FM65
Pfscan:PS50213PhylomeDB:Q9FM65PRIDE:Q9FM65PRO:PR:Q9FM65
PROSITE:PS50213ProteinModelPortal:Q9FM65Proteomes:UP000006548RefSeq:NP_001190550.1
RefSeq:NP_200384.1SMART:SM00554SMR:Q9FM65STRING:3702.AT5G55730.1
SUPFAM:SSF82153SwissPalm:Q9FM65TAIR:AT5G55730tair10-symbols:FLA1
UniGene:At.21565UniGene:At.67065UniProt:Q9FM65
Coordinates (TAIR10) chr5:-:22558375..22560392
Molecular Weight (calculated) 44851.80 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.04
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKKMSSLII IFNILLLLTT QTHAHNVTRL LANHPSFSSF SHFLTQTHLA DEINRRRTIT VCAVDNAAMS ALTSKGYTLS TLKNILSLHV LLDYFGTKKL
101: HQIRDGSALA ATLFQATGAA PGTSGFVNIT DLRGGKVGFG PDGGDLSSFF VKSIEEVPYN ISIIQISRVL PSETAAAPTP APAEMNLTGI MSAHGCKVFA
201: ETLLTNPGAS KTYQESLEGG MTVFCPGDDA MKGFLPKYKN LTAPKKEAFL DFLAVPTYYS MAMLKSNNGP MNTLATDGAN KFELTVQNDG EKVTLKTRIN
301: TVKIVDTLID EQPLAIYATD KVLLPKELFK ASAVEAPAPA PAPEDGDVAD SPKAAKGKAK GKKKKAAPSP DNDPFGDSDS PAEGPDGEAD DATADDAGAV
401: RIIGGAKAGL VVSLLCLFAS SWLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)