AT5G55540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tornado 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TORNADO 1 (TRN1); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G10510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22496322..22500543 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 156956.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.50 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1380 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MESEPDQSFK DLSWFLQAIK DPQQTFFNLQ TLSFSSSGNT THCQLITESS MNINVTRDNL TSLSQIFIEL ATSLETQTSL RNLEFEGIFW EIELLQSLGL 0101: LLDNTSKIKQ LAFRKNRFSE QCLNELSEIL KRNRFLKEVM FLESSIGYRG ATLLGSALQV NDSLEELQIW EDSIGSKGAE ELSRMIEMNS SLKLFSIFDS 0201: SPFTATPLIS AVLGMNREME VHMWSGDHKR DRSLKLVEFL PESKTLRIYQ IDISGSCRVA AALGMNTTVR SLDMTGAKLN SRWAKEFRWV LEQNKTLREV 0301: KLSKTGLKDK AVVYIAAGLF KNKSLQSLYV DGNRFGSVGV EDLLCPLSRF SALQLQANIT LRSIVFGGSN TKIGRDGLTA VLKMVTTNET VVHLGIHDDA 0401: SLGPDDFIHI FKSLQKNASL RRFSLQGCKG VRGDRVLEAI TETLQINPLI EEIDLARTPL QDSGKADEIY QKLGHNGRKI DEAETDDSLK DMPLTEPKSV 0501: RAFLCGQNYA GKTTLCNSIL QSSSASGFPY VENVRNLMNP VEQVVKTVGG MKIKTFKDEE TKISMWNLAG QHEFFALHDL MFPSPCFFLI VLSLFRKPSN 0601: KEPKTPAEVE EELEYWLRFI VSNSRKAIQQ CMKPNVTIVL THSEKINLQS ESFQATVGCI QRLRDKFQAL VEFYPTVFTV DARSSPSVSK LTHHIRMTSK 0701: AILQRVPRVY QLCNDIVQLL SDWRSENSNK PIMRWKAFAD LCQFKVPSLR IKSRNENIQI VETRRHAIAT CLHQMGEVIY FDDLGFLILD YEWFCGEVLT 0801: QLIKLDVRKQ STGERNGFVS RKELEKTLRS SLQSPIPGMT SKVLEHFDAC DLVKMMKKVE LCYEQDPSSP DSSLLVPSIL EEGRGKTQKW QINTHDCVYS 0901: GRHLQCDDSS HMFLTAGFFP RLQVHLHNRI MELKNQHGAT YSLEKYLIAI TIHGINIRVE LGGQLGNYID VLACSSKSLT ETLRLIHQLI IPAIQSSCRG 1001: VILLEHIIRP QCVQDLTPPR FRQSQFVSLH RLKEALSSVP AETMYDYQHT WDSVLDSGKT VLRAGFDLAR NLLSDDDFRE VLQRRYHDLH NLAQELQVPT 1101: DENPEADNHV PVTNELEKVD PSFGGIAKGV EAVLQRLKII EQEIRDLKQE IQGLRYYEHR LLIQLHHKVN YLVNYNVQMD ERKVPNMFYF IRAENYGRRL 1201: ITSMVPGMVA LRIHMLCEFR REMHVVEDQL GCDVMQIDNQ AVKCLAPYMT NFMKLVTFAL RIGANWAAGM GHMIPDLSHT IAHLANPAVM TGAAGAAGAI 1301: GVAAALGRNR GRDRDIQEQE QRAAQQWLID YLREQTCSTG RDIAEKFGLW RVRYRDDGSI AWICKRHMIT RAHEVIQVPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)