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AT5G51340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; Has 214 Blast hits to 140 proteins in 56 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSAKeggNOG:KOG2300EMBL:AB025621EMBL:CP002688EnsemblPlants:AT5G51340EnsemblPlants:AT5G51340.1entrez:835208
Gene3D:1.25.40.10GeneID:835208Gramene:AT5G51340.1hmmpanther:PTHR21394InterPro:IPR011990InterPro:IPR019440InterPro:IPR019734
KEGG:ath:AT5G51340KO:K11266ncoils:CoilOMA:EKAWSISPANTHER:PTHR21394Pfam:PF10345PhylomeDB:Q9FGN7
Proteomes:UP000006548Reactome:R-ATH-2470946RefSeq:NP_199947.1SMART:SM00028SMR:Q9FGN7STRING:3702.AT5G51340.1SUPFAM:SSF48452
TAIR:AT5G51340UniGene:At.42979UniProt:Q9FGN7
Coordinates (TAIR10) chr5:+:20863594..20867171
Molecular Weight (calculated) 81884.50 Da
IEP (calculated) 6.58
GRAVY (calculated) -0.17
Length 726 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGAAVAEGL WGLADHHQKL GEIGKTIKCL EAICQSQISF LPLVEVKSRL RLAALLLRYS HNVNHAKSHL ERSLLLLKSI PSSYDLKFQN YSLLSHCYHL
101: LASFPPQRNL LVKALELASS VPQDISAYLW SCNFNSQLAN TFIIQADFPS SLSALESGFL SASHICFPEL QMFFTASMLH VHIMQWTDDY SVEKAVQRCD
201: EIWQTISSDK TDRCPGLFFY NEMLHVFYRL RLCDYKNAQH HVDRLDQAMN AHSHKMQEIQ QLLDELSSLN LSLSRYDLPS RERSALSARQ SQLQDRVNAL
301: SPSSSTVNSL EPAYFGNIDR GWTEKLLLSP SPIDGEWLPK SAIDALVHLM VVISGRPKGL FKECSKRIES GLQIIQDELI KLGITDEVRE ADLRHTAIWM
401: SRVFLMLQMQ FLENRVALEL TRSDYVEAEE ALVDMKNWFT RFPTILQASE CMIEMLRGQY SHSVGCYSEA AFHCIEATKL TESISMQASC QAFAAVSYLT
501: IGDAESSSKA LDLIGPLNGM TNSLSGVREE ASILFAYGLL LMKQRDLQEA RNRLAKGLQI AHNHMGNLQL VAQYLTLLGN LALSLHDTVQ AREILRSSLT
601: LAKKLYDIPT QLWVLSIFTA LYQQLGEKGN EMENEEFRKK KWDELQSRLA EARGSIHHIE LVAKARIELY QIDNNPQEQS LVASAQSMQG NLDIPESVGI
701: EGPSPAPSSS RLVGLDTGKR WGKRRM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)