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AT5G50450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HCP-like superfamily protein with MYND-type zinc finger
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT1G67340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20359eggNOG:ENOG410JQ3ReggNOG:ENOG410YZIDEMBL:AB012248
EMBL:AY099743EMBL:BT000275EMBL:CP002688EnsemblPlants:AT5G50450
EnsemblPlants:AT5G50450.1entrez:835113Gene3D:1.25.40.10GeneID:835113
Genevisible:Q9FK27GO:GO:0046872Gramene:AT5G50450.1hmmpanther:PTHR12298
hmmpanther:PTHR12298:SF7HOGENOM:HOG000238617InParanoid:Q9FK27IntAct:Q9FK27
InterPro:IPR002893InterPro:IPR011990KEGG:ath:AT5G50450OMA:DWRAKHK
PaxDb:Q9FK27Pfam:PF01753Pfam:PF08238Pfam:Q9FK27
Pfscan:PS50865PhylomeDB:Q9FK27PRIDE:Q9FK27PRO:PR:Q9FK27
PROSITE:PS01360PROSITE:PS50865ProteinModelPortal:Q9FK27Proteomes:UP000006548
RefSeq:NP_199856.1STRING:3702.AT5G50450.1SUPFAM:SSF144232SUPFAM:SSF81901
TAIR:AT5G50450UniGene:At.24402UniProt:Q9FK27
Coordinates (TAIR10) chr5:-:20543519..20544698
Molecular Weight (calculated) 36813.80 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.27
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MTHLNKKQRL ENNHNNTVNN HFEDLHDDLI ISILRKLATS ASSPSDFLTV LSTCKRLNRL GLHPLVLSKA GTQTLAVTAE KWSDSSHKFL KLCVNAGNID
101: ASYSLGMIRF YCLQNPVSGA SLMAKAAIKS HAPALYSLSV IQFNGSGGSK TDKNLRAGVA LCARSAYLGH VDALRELGHC LQDGYGVPRD VSEGRRLLIQ
201: ANARELACSL RSYLSLKSGD ENETLTDLSV VPVQEIHPVN RFLKEWFSSG RVDLAEGLRM CSHGGCGRPE TRAHEFRRCS VCGKVNYCSR GCQALDWRAK
301: HKVECTPLDL WVAAAAEIGD DGEAVAVEID DNHGER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)