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AT5G47430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DWNN domain, a CCHC-type zinc finger
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT4G17410.1); Has 13590 Blast hits to 9527 proteins in 457 species: Archae - 2; Bacteria - 408; Metazoa - 7940; Fungi - 2101; Plants - 1227; Viruses - 27; Other Eukaryotes - 1885 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5222eggNOG:KOG0314EMBL:AK316913EMBL:CP002688EnsemblPlants:AT5G47430EnsemblPlants:AT5G47430.1entrez:834790
ExpressionAtlas:B9DFV2Gene3D:3.30.40.10GeneID:834790GO:GO:0003676GO:GO:0005634GO:GO:0008270Gramene:AT5G47430.1
hmmpanther:PTHR15439HOGENOM:HOG000015179InterPro:IPR001878InterPro:IPR013083InterPro:IPR014891InterPro:IPR025829OMA:DACESTQ
Pfam:PF08783Pfam:PF13696Pfscan:PS51282PhylomeDB:B9DFV2PROSITE:PS51282Proteomes:UP000006548RefSeq:NP_199554.2
SMART:SM01180SMR:B9DFV2STRING:3702.AT5G47430.1SUPFAM:SSF57756SUPFAM:SSF57850TAIR:AT5G47430UniGene:At.29893
UniProt:B9DFV2
Coordinates (TAIR10) chr5:-:19235819..19240596
Molecular Weight (calculated) 99088.60 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.93
Length 892 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIYYKFKSA RDYDTIAMDG PFISVGILKD KIFETKHLGT GKDLDIVVSN AQTNEEYLDE AMLIPKNTSV LIRRVPGRPR ITVITTQEPR IQNKVEDVQA
101: ETTNFPVADP SAAEFPEDEY DEFGTDLYSI PDTQDAQHII PRPHLATADD KVDEESKIQA LIDTPALDWQ QRQGQDTFGA GRGYGRGMPG RMNGRGFGME
201: RKTPPPGYVC HRCNIPGHFI QHCPTNGDPN YDVKRVKPPT GIPKSMLMAT PDGSYSLPSG AVAVLKPNED AFEKEMEGLP STTRSVGELP PELKCPLCKE
301: VMKDAALTSK CCYKSFCDKC IRDHIISKSM CVCGRSDVLA DDLLPNKTLR DTINRILEAG NDSTENVGSV GHIPDLESAR CPPPKALSPT TSVASKGEKK
401: PVLSNNNDAS TLKAPMEVAE ITSAPRASAE VNVEKPVDAC ESTQGSVIVK EATVSKLNTQ APKEEMQQQV AAGEPGKKKK KKPRVPGNDM QWNPVPDLAG
501: PDYMMQMGPG PQYFNGMQPG FNGVQPGFNG VQPGFNGFHP GFNGFGGPFP GAMPPFMGYG LNPMDMGFGG GMNMMHPDPF MAQGFGFPNI PPPHRDLAEM
601: GNRMNLQRAM MGRDEAEARN AEMLRKRENE RRPEGGKMFR DGENSRMMMN NGTSASASSI NPNKSRQAPP PPIHDYDRRR RPEKRLSPEH PPTRKNISPS
701: RDSKRKSERY PDERDRQRDR ERSRHQDVDR EHDRTRDRRD EDRSRDHRHH RGETERSQHH HRKRSEPPSS EPPVPATKAE IENNLKSSVF ARISFPEEET
801: SSGKRRKVPS SSSTSVTDPS ASASAAAAVG TSVHRHSSRK EIEVADYESS DEDRHFKRKP SRYARSPPVV VSDVSEDKLR YSKRGKGERS RA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)