suba logo
AT5G41330.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BTB/POZ domain with WD40/YVTN repeat-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB/POZ domain with WD40/YVTN repeat-like protein; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G09030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:834135eggNOG:ENOG410XSWIeggNOG:KOG2714EMBL:AB006707EMBL:AK230358EMBL:AK230359EMBL:AK230369
EMBL:BT015947EMBL:CP002688EnsemblPlants:AT5G41330EnsemblPlants:AT5G41330.1entrez:834135Gene3D:2.130.10.10GeneID:834135
Genevisible:Q9FN67GO:GO:0016567GO:GO:0051260Gramene:AT5G41330.1hmmpanther:PTHR11145HOGENOM:HOG000239940InParanoid:Q9FN67
InterPro:IPR000210InterPro:IPR003131InterPro:IPR011333InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT5G41330OMA:LEPWVCI
PaxDb:Q9FN67Pfam:PF02214Pfam:Q9FN67PhylomeDB:Q9FN67PRIDE:Q9FN67PRO:PR:Q9FN67ProteinModelPortal:Q9FN67
Proteomes:UP000006548RefSeq:NP_198949.1SMART:SM00225SMR:Q9FN67STRING:3702.AT5G41330.1SUPFAM:SSF50978SUPFAM:SSF54695
TAIR:AT5G41330UniGene:At.43347UniGene:At.55295UniPathway:UPA00143UniProt:Q9FN67
Coordinates (TAIR10) chr5:-:16536452..16537828
Molecular Weight (calculated) 50422.40 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.20
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFPTIPHES NVVSINVGGR IFQTTKQTLS LAGTDSLLSQ LATETTRFVD RDPDLFSVLL YILRTGNLPA RSRAFDVRDL IDESRYYGIE SFLIDSLSNS
101: SQFEPFDLRR SRILQLNGRD SPSSISPTVI GGGLHVAHGS KITSFDWSLR QKSTVLTNFS AVDSLLEISP GVLAAGATDF PGLQIIDLDN GGFVRTTLNW
201: ENVTRSSSTV QAIGSSHEFL FTSFESSRRN SNSIMVYDLS SLLPVSEIDH CEIYGADIDS AIPSTKLKWI QSCNLLMVSG SHTSPSGVNG HIRFWDVRSR
301: NMVWEIKEAQ DCFSDVTVSD NLSAVFKVGV TSGEVFYADL RSLGTKDPWV CLGEEKKRNL NERRGVGSKI ESYGNHVFCS SKGSGIELWS EVITGLVGNA
401: SRDVLEERVF RKNSLGKLAD SGENKITGLA FGGNRMFVTR KDQQSVQVWQ SPSRGISI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)