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AT5G38170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT5G38160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JH96eggNOG:ENOG410Z1B5EMBL:AB005247EMBL:BT003991
EMBL:BT005091EMBL:CP002688EnsemblPlants:AT5G38170EnsemblPlants:AT5G38170.1
entrez:833797GeneID:833797Gramene:AT5G38170.1hmmpanther:PTHR33214
HOGENOM:HOG000243525IntAct:Q9FF39InterPro:IPR016140KEGG:ath:AT5G38170
OMA:VAGASCNPfam:PF14368PhylomeDB:Q9FF39Proteomes:UP000006548
RefSeq:NP_198633.1SMART:SM00499SMR:Q9FF39STRING:3702.AT5G38170.1
SUPFAM:SSF47699TAIR:AT5G38170TMHMM:TMhelixUniGene:At.30430
UniProt:Q9FF39
Coordinates (TAIR10) chr5:+:15227717..15228028
Molecular Weight (calculated) 10936.40 Da
IEP (calculated) 7.96
GRAVY (calculated) 0.29
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFTALVFIV FVVGVMVSPV SIRATEVKLS GGEADVTCDA VQLSSCATPM LTGVPPSTEC CGKLKEQQPC FCTYIKDPRY SQYVGSANAK KTLATCGVPY
101: PTC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)