AT5G24320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G53500.1); Has 26833 Blast hits to 16918 proteins in 673 species: Archae - 62; Bacteria - 5430; Metazoa - 9873; Fungi - 5372; Plants - 2902; Viruses - 3; Other Eukaryotes - 3191 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8284858..8287651 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76821.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.16 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 694 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLIEEEEE SRFFDAHEEI ASCSSPCKIE SPSSISGEFR YDVWIKSPGN TEERREKFLK WMGLSSTVNE SKSGNVYRLS SSVNESAVLM SLKSDDDEFS 101: SSRCDSFSPS ESVDRVVNES LCKEEGEVDS GMVLRNLGFV DDGDISSSLC SLSSSPVSDK IVKEHGEPKL LPDPMVAEEE REVSGIMKRV KEKWLSRLYK 201: VRNKRSAGGD DNGGEVAVCG SRIERVKVKE YKKEAKELSA LFKGQEIQAH EGAILAMKFS PDGRYLASAG EDGVLRVWSV VEDERCEEHD VPKIDPSCIY 301: FEVSKLSELR PVAVEKDGIT GSLMSPRKTT ESACVIIPPK IFRVLDKPLH EFLGHSGDIL DISWSKNNRL LSASVDNSVR LWQIGCEDCL GIFSHNNYVT 401: SVQFNPVDDD HFISGSIDGK VRIWSASQCQ VVDWADARGI VTAVCYQPDG QAVIIGTLTS DCRFYNVSGH CLQLDGHICL HNKKKSSNKR IIGFQFDSTD 501: PSRVMVASAD SQVRIISGRN VVHKYKGSRN AGNQISASFT ADGKHIVSAC DDSSVYVWNC VGHDPEQSSP GFFSHTKRLK IRSFEKFSAD VSVAIPWCGF 601: TPVLSGGSEL SPSLFSLGRE YVLDSPKGSA TWPEEKLASS FSPVKAIRRS HYKFLRSSCR RTSESSHLWG LVIVTGGWDG RIKLFHNYGL PVPV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)