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AT5G23690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotide adenylyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G48830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:832434eggNOG:COG0617eggNOG:KOG2159EMBL:CP002688
EnsemblPlants:AT5G23690EnsemblPlants:AT5G23690.1entrez:832434GeneID:832434
GO:GO:0003723GO:GO:0006396GO:GO:0016779Gramene:AT5G23690.1
hmmpanther:PTHR13734hmmpanther:PTHR13734:SF47InParanoid:F4KE92InterPro:IPR002646
InterPro:IPR032828KEGG:ath:AT5G23690OMA:DKGTNMLPaxDb:F4KE92
Pfam:PF01743Pfam:PF12627PRIDE:F4KE92ProteinModelPortal:F4KE92
Proteomes:UP000006548RefSeq:NP_197758.2SMR:F4KE92STRING:3702.AT5G23690.1
SUPFAM:SSF81301SUPFAM:SSF81891TAIR:AT5G23690UniGene:At.30996
UniProt:F4KE92
Coordinates (TAIR10) chr5:+:7987664..7990466
Molecular Weight (calculated) 59616.90 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.16
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISSVGFAC RSFSPVRTLQ SHCLWKIRFN TVAAAIETMD ESDGFATDSD RQDKVSDEPR DREWKQLNSK DLGLSSSMIA KSTRKVLNGL KSKGHDVYLV
101: GGCVRDLILK RTPKDFDILT SAELREVVRT FPRCEIVGRR FPICHVHIGD DLIEVSSFST SAQNSSRNTR TECKESSGSD GDEDCIRLNN CLQRDFTING
201: LMFDPYAKVV YDYLGGMEDI RKAKVRTVIH AGTSFHQDCA RILRAIRIAA RLGFRMSKET AHFIKNLSLL VQRLDKGRIL MEMNYMLAYG SAEASLRLLW
301: KFGILEILLP IQAAYLARSG FRRRDKRTNM LLSLFANLDK LLAPDRPCHS SLWIAILAFH KALADKPRSP IVVAAFSLAV HNCGDILEAV EITKKITRPH
401: DKSFFELVEP EENLDFQTLL DEVMDLDASI EDALNQMTDA YFISKAMSAY PQAPYSDLVF IPLQLYLRAG RIFDCVKNEE TRIGFEAKQG SKIEYGSLNS
501: GYFPEIRHVF ARVVFDTVFP LNLSQEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)