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AT5G23340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.511
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AB007648EMBL:AK226277EMBL:AY054268EMBL:AY133522EMBL:CP002688
EnsemblPlants:AT5G23340EnsemblPlants:AT5G23340.1entrez:832398Gene3D:3.80.10.10GeneID:832398Gramene:AT5G23340.1hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF524HOGENOM:HOG000030079IntAct:Q9FMW7InterPro:IPR001611InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT5G23340
KO:K10268OMA:PAGCKVNPfam:PF13516PhylomeDB:Q9FMW7Proteomes:UP000006548RefSeq:NP_197725.1SMART:SM00367
SMR:Q9FMW7STRING:3702.AT5G23340.1SUPFAM:SSF52047TAIR:AT5G23340UniGene:At.21636UniGene:At.71067UniProt:Q9FMW7
Coordinates (TAIR10) chr5:+:7856314..7857983
Molecular Weight (calculated) 44228.50 Da
IEP (calculated) 6.60
GRAVY (calculated) 0.02
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSVCVNEAL TDDELRWVLS RLDSDKDKEV FGLVCKRWLN LQSTDRKKLA ARAGPHMLRR LASRFTQIVE LDLSQSISRS FYPGVTDSDL AVISEGFKFL
101: RVLNLHNCKG ITDTGLASIG RCLSLLQFLD VSYCRKLSDK GLSAVAEGCH DLRALHLAGC RFITDESLKS LSERCRDLEA LGLQGCTNIT DSGLADLVKG
201: CRKIKSLDIN KCSNVGDAGV SSVAKACASS LKTLKLLDCY KVGNESISSL AQFCKNLETL IIGGCRDISD ESIMLLADSC KDSLKNLRMD WCLNISDSSL
301: SCILKQCKNL EALDIGCCEE VTDTAFRDLG SDDVLGLKVL KVSNCTKITV TGIGKLLDKC SSLEYIDVRS LPHVTEVRCS EAGLEFPKCC KVNFSGSLTE
401: PDVLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)