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AT5G11930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.540
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G33040.1); Has 825 Blast hits to 825 proteins in 90 species: Archae - 0; Bacteria - 22; Metazoa - 106; Fungi - 2; Plants - 671; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
BioGrid:16344eggNOG:COG0695eggNOG:KOG1752EMBL:AL163812EMBL:BT024765EMBL:CP002688EMBL:FJ611919
EnsemblPlants:AT5G11930EnsemblPlants:AT5G11930.1entrez:831066Gene3D:3.40.30.10GeneID:831066Genevisible:Q29PZ1GO:GO:0005737
GO:GO:0009055GO:GO:0015035GO:GO:0045454Gramene:AT5G11930.1hmmpanther:PTHR10168hmmpanther:PTHR10168:SF56HOGENOM:HOG000095204
InParanoid:Q29PZ1InterPro:IPR002109InterPro:IPR011905InterPro:IPR012336KEGG:ath:AT5G11930OMA:NCSNDAVPaxDb:Q29PZ1
Pfam:PF00462Pfam:Q29PZ1Pfscan:PS51354PhylomeDB:Q29PZ1PIR:T48552PRIDE:Q29PZ1PRO:PR:Q29PZ1
PROSITE:PS51354ProteinModelPortal:Q29PZ1Proteomes:UP000006548RefSeq:NP_196754.2SMR:Q29PZ1STRING:3702.AT5G11930.1SUPFAM:SSF52833
TAIR:AT5G11930TIGRfam:TIGR02189TIGRFAMs:TIGR02189UniGene:At.49741UniProt:Q29PZ1
Coordinates (TAIR10) chr5:-:3845165..3845611
Molecular Weight (calculated) 15710.10 Da
IEP (calculated) 5.11
GRAVY (calculated) 0.31
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTMRGLRNC SNDAVTLDLT VHPPPPPPLP PPAPSTVSSS TASTSLSFDE EETSESKIGR LISEHPVIIF TRFSSCCMCH VMKKLLSTVG VHPTVIEIDD
101: GEIAYLAVEA APVLFIGGTC VGGFESLVAL HLSGQLIPRL VEVGALWA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)