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AT5G09770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L17 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L17 (InterPro:IPR000456); BEST Arabidopsis thaliana protein match is: Ribosomal protein L17 family protein (TAIR:AT5G64650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0203eggNOG:KOG3280EMBL:AK228114EMBL:AY086225
EMBL:BT003108EMBL:CP002688EnsemblPlants:AT5G09770EnsemblPlants:AT5G09770.1
entrez:830837Gene3D:3.90.1030.10GeneID:830837GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT5G09770.1HAMAP:MF_01368
hmmpanther:PTHR14413HOGENOM:HOG000019780IntAct:Q8LD39InterPro:IPR000456
KEGG:ath:AT5G09770KO:K02879OMA:LDPWERSPANTHER:PTHR14413
Pfam:PF01196PhylomeDB:Q8LD39Proteomes:UP000006548RefSeq:NP_568216.1
SMR:Q8LD39STRING:3702.AT5G09770.1SUPFAM:SSF64263TAIR:AT5G09770
TIGRfam:TIGR00059TIGRFAMs:TIGR00059UniGene:At.32461UniGene:At.72723
UniProt:Q8LD39
Coordinates (TAIR10) chr5:-:3035267..3036518
Molecular Weight (calculated) 18446.50 Da
IEP (calculated) 11.24
GRAVY (calculated) -0.77
Length 160 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKFRKLGRP AGHRMSMLRT MVSQLVKHER IETTVTKAKE VRRLADNMIQ LGKEGSLSAA RRAAGFVRGD DVLHKIFTEL AHRYKDRAGG YTRLLRTRIR
101: VGDAAPMAYI EFIDRENELR QSKPATPQPP QRVPLDPWER SRLTRQFAPP KEEKIPDSEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)