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AT5G08020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RPA70-kDa subunit B
Curator
Summary (TAIR10)
Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.
Computational
Description (TAIR10)
RPA70-kDa subunit B (RPA70B); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: DNA repair, response to UV-B, DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G61000.1); Has 1056 Blast hits to 1045 proteins in 226 species: Archae - 10; Bacteria - 0; Metazoa - 213; Fungi - 147; Plants - 535; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
BioGrid:15974eggNOG:COG1599eggNOG:KOG0851EMBL:AL133421EMBL:CP002688EnsemblPlants:AT5G08020EnsemblPlants:AT5G08020.1
entrez:830696Gene3D:2.40.50.140GeneID:830696Genevisible:Q9SD82GO:GO:0003677GO:GO:0005634GO:GO:0006260
GO:GO:0006281GO:GO:0006310GO:GO:0010224GO:GO:0046872Gramene:AT5G08020.1hmmpanther:PTHR23273hmmpanther:PTHR23273:SF4
HOGENOM:HOG000162322InParanoid:Q9SD82InterPro:IPR004365InterPro:IPR004591InterPro:IPR007199InterPro:IPR012340InterPro:IPR013955
InterPro:IPR031657KEGG:ath:AT5G08020KO:K07466OMA:TIRCTAFPaxDb:Q9SD82Pfam:PF01336Pfam:PF04057
Pfam:PF08646Pfam:PF16900Pfam:Q9SD82PhylomeDB:Q9SD82PIR:T45627PRIDE:Q9SD82PRO:PR:Q9SD82
ProteinModelPortal:Q9SD82Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-110314Reactome:R-ATH-110320Reactome:R-ATH-174437Reactome:R-ATH-3108214
Reactome:R-ATH-5651801Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169Reactome:R-ATH-5696395Reactome:R-ATH-5696397Reactome:R-ATH-5696400
Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-68962Reactome:R-ATH-69166RefSeq:NP_196419.1SMR:Q9SD82STRING:3702.AT5G08020.1
SUPFAM:SSF50249TAIR:AT5G08020tair10-symbols:ATRPA70Btair10-symbols:RPA70BTIGRfam:TIGR00617TIGRFAMs:TIGR00617UniGene:At.54774
UniProt:Q9SD82
Coordinates (TAIR10) chr5:+:2572107..2574879
Molecular Weight (calculated) 67293.00 Da
IEP (calculated) 6.41
GRAVY (calculated) -0.42
Length 604 amino acids
Sequence (TAIR10)
(BLAST)
001: MENSVTQDGI ATVLANQSLD SSSVRPEIVV QVVDLKPAGN RYTFSANDGK MKIKAMLPAT LTSDIISGKI QNLGLIRLLE YTVNDIPGKS EEKYMLITKC
101: EAVASALDSE IKAEIKASTG IMLKPKHEFV AKSASQIINE QRGNAAPAAR MAMTRRVHPL VSLNPYQGSW TIKVRVTNKG VMRTYKNARG EGCVFNVELT
201: DEEGTQIQAT MFNAAARKFY DRFEMGKVYY ISRGSLKLAN KQFKTVQNDY EMTLNENSEV EEASNEEMFT PETKFNFVPI DELGTYVNQK DLIDVIGVVQ
301: SVSPTMSIRR KNDNEMIPKR DITLADETKK TVVVSLWNDL ATGIGQELLD MADNHPVIAI KSLKVGAFQG VSLSTISRSN VVINPNSPEA TKLKSWYDAE
401: GKETSMSAIG SGMSSSANNG SRSMYSDRVF LSHITSNPSL GEEKPVFFST RAYISFIKPD QTMWYRACKT CNKKVTEAMD SGYWCESCQK KDQECSLRYI
501: MAVKVSDSTG ETWLSAFNDE AEKIIGCTAD DLNDLKSEEG EVNEFQTKLK EATWSSHLFR ISVSQQEYNS EKRQRITVRG VSPIDFAAET RLLLQDISKN
601: KTSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)