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AT5G03190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : conserved peptide upstream open reading frame 47
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
conserved peptide upstream open reading frame 47 (CPUORF47); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53400.1); Has 272 Blast hits to 272 proteins in 24 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 264; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EMBL:AB005240EMBL:AL163002EMBL:BT002386EMBL:CP002688
EnsemblPlants:AT5G03190EnsemblPlants:AT5G03190.1entrez:831909ExpressionAtlas:Q9LYW6
Gene3D:3.40.50.150GeneID:831909GO:GO:0008168Gramene:AT5G03190.1
hmmpanther:PTHR33597hmmpanther:PTHR33597:SF4HOGENOM:HOG000015115InterPro:IPR013216
InterPro:IPR029063Pfam:PF08241PhylomeDB:Q9LYW6PIR:T48340
Proteomes:UP000006548RefSeq:NP_195939.1SMR:Q9LYW6STRING:3702.AT5G03190.2
SUPFAM:SSF53335TAIR:AT5G03190tair10-symbols:CPUORF47UniGene:At.28243
UniGene:At.63785UniProt:Q9LYW6
Coordinates (TAIR10) chr5:+:758793..760148
Molecular Weight (calculated) 50911.80 Da
IEP (calculated) 6.84
GRAVY (calculated) 0.03
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIKILKLNI FRGSTNRHAL FRALIIASAL SVVPLLELTA KNHVFGDHGA VDLVDLGRFV IPGPKLFFHK LVQPFWGKIE TEKYPQVVIA DLVDELMGLK
101: LLHYDAKILC IGQGSDSAVS GFKEMGFSVV QGVPKHPLFS FFSRKHVNEL ELSGDKSFDF VLCGDVDHVA SPALLVLEME RVLKPGGTGA VLVSTNANRL
201: VKSVTSGLKQ SEIVRVNNLD KFTVIVFKRN VTETAYCIGK SQLPRDCKSV DTNRPYTEFM EPLLEQKPAD FPKSVAYLPK FLDLSLKKSL VYIDIGAAEH
301: MDANLTPNWF FPLYPLDSKA FNVYFVDHNT SVMLSYVKKP GVTFVYHPDL AENNSTGKKI TPLEQLEPFP EDERFDFLAW FEETAKYADF VVLKMNTNQV
401: EMKFLTVLLE TGVICYVDEL FLRCSNHKSD CINMLQTLRA RGVFVHQWWE D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)