suba logo
AT5G01400.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HEAT repeat-containing protein
Curator
Summary (TAIR10)
Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64.
Computational
Description (TAIR10)
ENHANCED SILENCING PHENOTYPE 4 (ESP4); FUNCTIONS IN: binding; INVOLVED IN: posttranscriptional gene silencing by RNA, RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27595.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DIP:DIP-45976NeggNOG:ENOG410XQASeggNOG:KOG1895EMBL:AL161746EMBL:CP002688EnsemblPlants:AT5G01400EnsemblPlants:AT5G01400.1
entrez:831597Gene3D:1.25.10.10GeneID:831597GO:GO:0005847GO:GO:0006396GO:GO:0035194Gramene:AT5G01400.1
hmmpanther:PTHR15245hmmpanther:PTHR15245:SF25HOGENOM:HOG000082768IntAct:Q9M033InterPro:IPR011989InterPro:IPR016024InterPro:IPR022075
InterPro:IPR032460KEGG:ath:AT5G01400KO:K06100ncoils:CoilOMA:AHLGVEFPfam:PF11935Pfam:PF12295
PhylomeDB:Q9M033PIR:T48162Proteomes:UP000006548RefSeq:NP_195760.1SMR:Q9M033STRING:3702.AT5G01400.1SUPFAM:SSF48371
TAIR:AT5G01400tair10-symbols:ESP4UniGene:At.46243UniProt:Q9M033
Coordinates (TAIR10) chr5:-:162803..171072
Molecular Weight (calculated) 159487.00 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.21
Length 1467 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASYSRARLK DLANSAKSAT ELPPKLQRLR YMRRDLQKDD SVFPTELLPH LFDLLSDQFG AVRKFVAEIL GEIGLKYVEL IPEIVPLLIK SLEDETPAVA
0101: RQVIACGADL FRSTLERVAV QGLHSSELND LLESSWTWLI KFKDEICSVA FKQGNSGVKL CAMKFVEALI LLYTPHEGIE ADFNISILRG GHPVLKIGDL
0201: SIEASQKLGL LLDQLRHPAA KSLNSSTIIV LINSLSSVAK KRPAYCGRIL PVLLSLDPLS FLKGVYAAAT NLALKTVFLS CLKCTHPAAA PDRLTSALKE
0301: IEGGGQAAKA KDLFYKTNGS IQDKDSVEDT KVSVEENPLC ASSDVAESNL SRKRSGSEYN IDLNGDASDG KRARITPSVS EESTDGLNGN DGVSLPRVAS
0401: TSTGPSDSRG VSDSGPAQQL VGLFGTLVSQ GEKAIGSLEI LISSISADLL TDVVMANMHN IPPNCSSYAD GTDELVMNMC IVGSDAQIKY PPSFVAGVLS
0501: LSTAFPPIAA LINPHNEDEE VYSVHVDQQM FPAEDARTPP GLLATCDTSF PENEESNTVS PQNVHYIGNR ESGIPGLESS AQHDGSGALV TNVLSSTNVE
0601: AASKNQNASF SGKLLVDVIP SMSVDKLEEF SPKAVGTVAS ASQFVLPKIS APVVDLSDEE KDSLQKLVFL RIVEAYKQIS MSGGSQLRFS LLAHLGVEFP
0701: SELDPWKILQ EHVLSDYLNH EGHELTVRVL YRLYGEAEAE QDFFSSTTAA SAYESFLLTV AEALRDSFPP SDKSLSKLLG DSPHLPKSVL MLLESFCCPG
0801: SGEVEKDLQH GDRVTQGLSA VWSLILMRPG IRNDCLNIAL QSAVHHLEEI RMKAIRLVAN KLYSLSFITE QIEEFAKDRL FSVVSDDCDK MDLDLKSPPN
0901: KPQHSISGMS METPSEATSS STSVTEAQRC LSLYFALCTK VLRIFTILRL MTNLVFNIYK NASDPVKQAI HLQIPILVRT MGSSSELLKI IADPPSGSDN
1001: LLIQVLQTLT EGPTPSSELI LTIRKLFDTR IKDVEILFPI LPFLPRDDVL RIFPHMVNLP MEKFQVALSR VLQGSSQSGP VLSPSEALIA IHSIDPARDG
1101: IPLKQVTDAC NTCFAQRQTF TQQVLAGVLN QLVQQIPLPM LFMRTVLQAI GAFPALSDFI LEILSRLVSK QIWKYPKLWV GFLKCTQTTQ PQSYKVLLQL
1201: PPLQLGNALT KIPALRAPLT AHASQPEIQS SLPRSTLAVL GLVPDSQGTQ TSQVQANETQ TSQEQQQQQA SEPQQTSQSQ QVSVPLSHSQ VDHQEPSQVV
1301: ASQSQSSPIG TVQSAMSQSQ NSPIDTGRSE MSQSQNSPID TGRSEMSQSQ NSPIDTGRSE MSQSQNSPID TGRSEMSESQ SSPIGQSQSS PIGTGQSDMS
1401: QTPQVSDSSA PEPTSHTRTS DPQASSQTLR DDDEKIDDTA TSENEVTEIE KSKESSEEEE EEEEEEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)