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AT4G34470.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.590
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SKP1-like 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 12 (SK12); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 11 (TAIR:AT4G34210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14880eggNOG:COG5201eggNOG:KOG1724EMBL:AL023094
EMBL:AL161585EMBL:CP002687EnsemblPlants:AT4G34470EnsemblPlants:AT4G34470.1
entrez:829598GeneID:829598Genevisible:O65674GO:GO:0005634
GO:GO:0006511GO:GO:0016567Gramene:AT4G34470.1hmmpanther:PTHR11165
HOGENOM:HOG000172184InParanoid:O65674IntAct:O65674InterPro:IPR001232
InterPro:IPR011333InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897
KEGG:ath:AT4G34470KO:K03094OMA:HRENQWAPaxDb:O65674
Pfam:O65674Pfam:PF01466Pfam:PF03931PhylomeDB:O65674
PIR:T05267PIRSF:PIRSF028729PRO:PR:O65674ProteinModelPortal:O65674
Proteomes:UP000006548RefSeq:NP_567967.1SMART:SM00512SMR:O65674
STRING:3702.AT4G34470.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT4G34470
tair10-symbols:ASK12tair10-symbols:SK12UniGene:At.65453UniPathway:UPA00143
UniProt:O65674
Coordinates (TAIR10) chr4:-:16480022..16480480
Molecular Weight (calculated) 17363.50 Da
IEP (calculated) 3.99
GRAVY (calculated) -0.30
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK KYHVDEANPI SEEDLNKWDE KFMDLEQSTI FELILAANYL
101: NIKSLFDLTC QTVADMIKGK TPEEIRSTFN IENDFTPEEE EAVRKENQWA FE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)