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AT4G28770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23990937 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetraspanin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 163 Blast hits to 163 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWQTeggNOG:ENOG410YNZEEMBL:AK227413EMBL:AL035353EMBL:AL161573EMBL:AY085919EMBL:BT005982
EMBL:CP002687EnsemblPlants:AT4G28770EnsemblPlants:AT4G28770.1entrez:828998ExpressionAtlas:Q9SVU4GeneID:828998Genevisible:Q9SVU4
GO:GO:0005774GO:GO:0016021hmmpanther:PTHR19282hmmpanther:PTHR19282:SF227HOGENOM:HOG000029054InParanoid:Q9SVU4PaxDb:Q9SVU4
Pfam:Q9SVU4PhylomeDB:Q9SVU4PIR:T04522PRIDE:Q9SVU4PRO:PR:Q9SVU4Proteomes:UP000006548RefSeq:NP_194606.1
STRING:3702.AT4G28770.2SwissPalm:Q9SVU4TAIR:AT4G28770TCDB:8.A.40.5.1TMHMM:TMhelixUniGene:At.2528UniGene:At.66645
UniProt:Q9SVU4
Coordinates (TAIR10) chr4:-:14212177..14213518
Molecular Weight (calculated) 30978.40 Da
IEP (calculated) 4.65
GRAVY (calculated) 0.30
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MRHNCCHVSF ASILKILNFL QAFIGISIII YSIWMLDQYN HHVPVDPPPS QPPAASSPDS SYSFSNSIIE INSVSDSLKN PIDFVSGIVL GSGGGDSGFN
101: LRSLDLPAPW FIYCFMAIGI LVCIVTIIGF IAAEAINGCC LCFYSILKTL LIIIEAALVG FIVIDRHWEK DLPYDPTGEL NSLRAFIEEN IDICKWVGIV
201: VVAIQLLSLL LALVLRAMVS PRQSELDDED DFENPMSRAR DNLLGPQANQ TSSGSSNIDN WRSRIREKYG LINSQSHTPS A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)