AT4G17550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate starvation-induced gene 3 (TAIR:AT3G47420.1); Has 16541 Blast hits to 16470 proteins in 1914 species: Archae - 148; Bacteria - 14105; Metazoa - 649; Fungi - 878; Plants - 215; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9777938..9779738 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59078.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 544 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMNSKRKTP PGIALLRRVR GRNWSPKTFR YAILFITFIA YACYHASRKP SSIVKSVLHP DSSTKPPQEH NSDKIYPWPM GNVFVKREIG DIDEVLLHRK 101: SKGWEPFNGK DGTSRLGEID VAFLACYSIG MYVAGHLGDS LDLRLFLTWG MIGSGFFVGL FGMGYFWNIH AFWFFLVMQM AAGLFQATGW PSVVAVVGNW 201: FGKRKRGLIM GIWNAHTSVG NICGSLIAAG VLEYGWGWSF IAPGFVMSLG GVLVYLFLAA YPEDVGFPDI NSNSGKFIKR KRDVEEEEEE VEEDLGTDVE 301: GDGEGSSGSG SGYENKRSVG LLQACMIPGV IPFALCLFFS KLVAYTFLYW LPFYLSQTTI GGEYVSVKTA GNLSTLFDVG GIVGGILCGY ISDKFKARAT 401: TAAAFMYAAI PAMLVYHSYG GVSQTVNILL MMVAGLFVNG PYALITTAVS ADLGTHKSLQ GDSRALATVT AIIDGTGSAG AALGPLLTGF LSTLGWQAVF 501: YMLVVGALCA GLLLTRLVIA EIREKLGYVD EEVPASEPLL TDRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)