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AT3G55580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G53830.1); Has 20178 Blast hits to 6212 proteins in 476 species: Archae - 78; Bacteria - 2696; Metazoa - 7040; Fungi - 1181; Plants - 2975; Viruses - 2; Other Eukaryotes - 6206 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:KOG1426EMBL:AL132975EMBL:CP002686
EnsemblPlants:AT3G55580EnsemblPlants:AT3G55580.1entrez:824723Gene3D:2.130.10.30
GeneID:824723GO:GO:0005634GO:GO:0009631GO:GO:0042393
GO:GO:0071497GO:GO:1901141Gramene:AT3G55580.1hmmpanther:PTHR22870
hmmpanther:PTHR22870:SF204InterPro:IPR000408InterPro:IPR009091KEGG:ath:AT3G55580
OMA:EENAFAPPfam:PF00415Pfam:PF13540Pfscan:PS50012
PhylomeDB:Q9M2S1PIR:T47697PRINTS:PR00633PROSITE:PS00626
PROSITE:PS50012Proteomes:UP000006548RefSeq:NP_191117.1scanprosite:PS00626
SMR:Q9M2S1STRING:3702.AT3G55580.1SUPFAM:SSF50985TAIR:AT3G55580
UniGene:At.35013UniProt:Q9M2S1
Coordinates (TAIR10) chr3:+:20612766..20615730
Molecular Weight (calculated) 51409.40 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.26
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGEGKLETG GTSAAATPKE EKEEEEVVSQ RVVYMWGYLP GASPQRSPLM SPVEVKIPPA VESSWKDVSG GGCGFAMATA ESGKLITWGS TDDLGQSYVT
101: SGKHGETPEP FPLPPEVCVQ KAEAGWAHCV AVTENQQVYT WGWRECIPTG RVFGQVDGDS CERNISFSTE QVSSSSQGKK SSGGTSSQVE GRGGGEPTKK
201: RRISPSKQAA ENSSQSDNID LSALPCLVSL APGVRIVSVA AGGRHTLALS DIGQVWGWGY GGEGQLGLGS RVRLVSSPHP IPCIEPSSYG KATSSGVNMS
301: SVVQCGRVLG SYVKKIACGG RHSAVITDTG ALLTFGWGLY GQCGQGSTDD ELSPTCVSSL LGIRIEEVAA GLWHTTCASS DGDVYAFGGN QFGQLGTGCD
401: QAETLPKLLE APNLENVNVK TISCGARHTA VITDEGRVFC WGWNKYGQLG IGDVIDRNAP AEVRIKDCFP KNIACGWWHT LLLGQPTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)