AT4G16860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.596 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
recognition of peronospora parasitica 4 (RPP4); FUNCTIONS IN: LRR domain binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 24682 Blast hits to 14766 proteins in 601 species: Archae - 8; Bacteria - 1131; Metazoa - 1818; Fungi - 127; Plants - 20736; Viruses - 36; Other Eukaryotes - 826 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9488584..9495700 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 130437.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1147 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSPSS RRYDVFPSFS GVDVRKTFLS HLIEALDRRS INTFMDHGIV RSCIIADALI TAIREARISI VIFSENYASS TWCLNELVEI HKCYKKGEQM 0101: VIPVFYGVDP SHVRKQIGGF GDVFKKTCED KPEDQKQRWV KALTDISNLA GEDLRNGPTE AFMVKKIAND VSNKLFPLPK GFGDFVGIED HIKAIKSILC 0201: LESKEARIMV GIWGQSGIGK STIGRALFSQ LSSQFHHRAF ITYKSTSGSD VSGMKLSWEK ELLSEILGQK DIKIDHFGVV EQRLKHKKVL ILLDDVDNLE 0301: FLKTLVGKAE WFGSGSRIIV ITQDKQLLKA HEIDLVYEVE LPSQGLALKM ISQYAFGKDS PPDDFKELAF EVAELVGSLP LGLSVLGSSL KGRDKDEWVK 0401: MMPRLRNDSD DKIEETLRVG YDRLNKKNRE LFKCIACFFN GFKVSNVKEL LEDDVGLTML ADKSLIRITP DGDIEMHNLL EKLGREIDRA KSKGNPAKRQ 0501: FLTNFEDIQE VVTEKTGTET VLGIRVPPTV LFSTRPLLVI NEESFKGMRN LQYLEIGHWS EIGLWSEIGL WSKIDLPQGL VYLPLKLKLL KWNYCPLKSL 0601: PSTFKAEYLV NLIMKYSKLE KLWEGTLPLG SLKKMDLGCS NNLKEIPDLS LAINLEELNL SKCESLVTLP SSIQNAIKLR TLYCSGVLLI DLKSLEGMCN 0701: LEYLSVDWSS MEGTQGLIYL PRKLKRLWWD YCPVKRLPSN FKAEYLVELR MENSDLEKLW DGTQPLGSLK EMYLHGSKYL KEIPDLSLAI NLERLYLFGC 0801: ESLVTLPSSI QNATKLINLD MRDCKKLESF PTDLNLESLE YLNLTGCPNL RNFPAIKMGC SYFEILQDRN EIEVEDCFWN KNLPAGLDYL DCLMRCMPCE 0901: FRPEYLTFLD VSGCKHEKLW EGIQSLGSLK RMDLSESENL TEIPDLSKAT NLKRLYLNGC KSLVTLPSTI GNLHRLVRLE MKECTGLELL PTDVNLSSLI 1001: ILDLSGCSSL RTFPLISTRI ECLYLENTAI EEVPCCIEDL TRLSVLLMYC CQRLKNISPN IFRLTSLMVA DFTDCRGVIK ALSDATVVAT MEDHVSCVPL 1101: SENIEYTCER FWDELYERNS RSIFSYKDED GDVYWVNWDL MMMLMLI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)