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AT3G60410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G25370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1T8eggNOG:ENOG41114KBEMBL:AF360301EMBL:AK318841
EMBL:BT020411EMBL:CP002686EnsemblPlants:AT3G60410EnsemblPlants:AT3G60410.1
EnsemblPlants:AT3G60410.2EnsemblPlants:AT3G60410.3entrez:825212GeneID:825212
Gramene:AT3G60410.1Gramene:AT3G60410.2Gramene:AT3G60410.3hmmpanther:PTHR33130
hmmpanther:PTHR33130:SF14HOGENOM:HOG000070906InterPro:IPR012438KEGG:ath:AT3G60410
OMA:WAMNHANPfam:PF07797PhylomeDB:Q9C5E4Proteomes:UP000006548
RefSeq:NP_001030901.2RefSeq:NP_567099.2RefSeq:NP_974465.2STRING:3702.AT3G60410.1
TAIR:AT3G60410UniGene:At.1235UniProt:Q9C5E4
Coordinates (TAIR10) chr3:+:22331612..22332680
Molecular Weight (calculated) 35055.20 Da
IEP (calculated) 10.70
GRAVY (calculated) -0.81
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRQSMAFPP PIHGSDAPPP PQPPSVVNGI ETSRRQQQQI AAASSSPVKS HPLHNFPLSD LRWAMNHANT HRLRKASSRS PLREANTGKG NLVIEEVNEA
101: SGSSFELRPE KKKGNASGVS DSAADRSATK STTPDGRSKI FIRIRTKNNE ETAVSTDIAT SVAASVQVTD DSAGPAIDAE GERISDGGGQ EADEFGPKTW
201: NLRPRRPPPT KKRSIGHGGG VLKSCNGALP ENKSLGTVRT ESIRSRNGVD AKMATTERKE KKPRLSISLS KLEIDEDIYA LTGSKPSRRP KKRAKNVQKQ
301: LDVLFPGLWM GNVSSEAYKV SEHA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)