AT3G56510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: TATA-binding protein binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); Has 528 Blast hits to 522 proteins in 214 species: Archae - 0; Bacteria - 2; Metazoa - 211; Fungi - 183; Plants - 47; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20944348..20946235 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29518.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.18 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||
| Length | 257 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQSEESHELT DGISEEKESK ETMKSQKADR KKKKLKEKLL KEASKADNRG VCYLSRIPPH MDHVRLRHIL AQYGELGRIY LAPEDSEAQV HRKRAGGFRG 101: QRFSEGWVEF AKKSVAKRVA DMLNGEQIGG KKKSSVYYDI WNIKYLTKFK WDDLTEEIAY KSAIREQKLN MVLSAAKREK DFYLSKIEKS RAMTEIDARM 201: EKKRKIQEES GSNAEAAPVF PPRAIFQFRQ KKSIENETSQ SKPGLSTDFL ASVFGGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)