AT3G56480.1
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Subcellular Consensus
(Prediction and Experimental)  :max.
SUBAcon:nucleus 0.396 cytosol 0.376 What is SUBAcon? What is ASURE? SUBAcon computations |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myosin heavy chain-related | ||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40820.1); Has 486 Blast hits to 458 proteins in 133 species: Archae - 0; Bacteria - 70; Metazoa - 142; Fungi - 25; Plants - 111; Viruses - 1; Other Eukaryotes - 137 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20936480..20938986 | ||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54921.60 Da | ||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||
| Length | 490 amino acids | ||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKVCPEIEG TLSLSVVPVS VDVSFASDHF PTYKLGPDNQ IVEEPKEDEK GPSVKETVEK ESELLSDQHK RLSVRDLASK FDKNLAAAVS LANEAKLREV 101: ASLEGHVMLK KLRDALEYMR GRTDGQNKQD VETAISMVEA LAVKLTQNEG ELIQEKFEVK KLGNFLKQTS EDAKKLVNQE KSFSCAEIET ARAVVLRLGE 201: AFEEQERISE ASRAQGPDVE KLVEEVQEAR QIKRMHHPTK VMGMQHELHG LRNRIQEKYM NSVKLHKEIA IIKRVEESKS CPFVLEGKQS LGSCLRIRVN 301: AQDNAPDLSN CSIQWYRAAC ETSRREAISG AIQSMYAPEP FDVGRILQAD ILSNGQKFTV TTDDPVDPDS GLPSRVESLM RKSNSEFSVV ISQMNGQDYA 401: SRSHVFTVGK TRIKLSRGWI TKARELYSTS MQLCGVRGNI KAPTKAVFWQ PRKSLTFILT FESEHERNAA IALARKYAFD CSVTLLGPDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)