AT3G56480.1
Subcellular Consensus
(Prediction and Experimental) ![]() .
SUBAcon:nucleus 0.396 cytosol 0.376 What is SUBAcon? What is ASURE? SUBAcon computations |
|
||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : myosin heavy chain-related | ||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40820.1); Has 486 Blast hits to 458 proteins in 133 species: Archae - 0; Bacteria - 70; Metazoa - 142; Fungi - 25; Plants - 111; Viruses - 1; Other Eukaryotes - 137 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:-:20936480..20938986 | ||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54921.60 Da | ||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||
Length | 490 amino acids | ||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTKVCPEIEG TLSLSVVPVS VDVSFASDHF PTYKLGPDNQ IVEEPKEDEK GPSVKETVEK ESELLSDQHK RLSVRDLASK FDKNLAAAVS LANEAKLREV 101: ASLEGHVMLK KLRDALEYMR GRTDGQNKQD VETAISMVEA LAVKLTQNEG ELIQEKFEVK KLGNFLKQTS EDAKKLVNQE KSFSCAEIET ARAVVLRLGE 201: AFEEQERISE ASRAQGPDVE KLVEEVQEAR QIKRMHHPTK VMGMQHELHG LRNRIQEKYM NSVKLHKEIA IIKRVEESKS CPFVLEGKQS LGSCLRIRVN 301: AQDNAPDLSN CSIQWYRAAC ETSRREAISG AIQSMYAPEP FDVGRILQAD ILSNGQKFTV TTDDPVDPDS GLPSRVESLM RKSNSEFSVV ISQMNGQDYA 401: SRSHVFTVGK TRIKLSRGWI TKARELYSTS MQLCGVRGNI KAPTKAVFWQ PRKSLTFILT FESEHERNAA IALARKYAFD CSVTLLGPDD |
||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)