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AT3G52900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.489
nucleus 0.479
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Family of unknown function (DUF662)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF662) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36355.1); Has 299 Blast hits to 297 proteins in 71 species: Archae - 2; Bacteria - 15; Metazoa - 102; Fungi - 2; Plants - 124; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBQ2eggNOG:ENOG4111D2MEMBL:AK229551EMBL:AL132969
EMBL:CP002686EnsemblPlants:AT3G52900EnsemblPlants:AT3G52900.1entrez:824456
GeneID:824456Gramene:AT3G52900.1hmmpanther:PTHR21470hmmpanther:PTHR21470:SF3
InterPro:IPR007033KEGG:ath:AT3G52900ncoils:CoilOMA:ANRDIKS
Pfam:PF04949PhylomeDB:Q9LFA1PIR:T47547Proteomes:UP000006548
RefSeq:NP_190858.1STRING:3702.AT3G52900.1TAIR:AT3G52900UniGene:At.35249
UniGene:At.71206UniProt:Q9LFA1
Coordinates (TAIR10) chr3:+:19613134..19613852
Molecular Weight (calculated) 18864.80 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.83
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSKNNSGAA AVSGVNTNGK LPMEDNEEEE IWKVAVTRFQ AREEEIERKK MTVKEKVQQR LGFAEEATRC LTQTLEELEI MGDPMRKEVG MVRKKIDMAN
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)