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AT3G50690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.476
nucleus 0.465
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein A (TAIR:AT1G09760.1); Has 87837 Blast hits to 40058 proteins in 1793 species: Archae - 912; Bacteria - 10630; Metazoa - 29004; Fungi - 15487; Plants - 5654; Viruses - 1023; Other Eukaryotes - 25127 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HZTeggNOG:KOG2739EMBL:AL132979EMBL:CP002686EnsemblPlants:AT3G50690EnsemblPlants:AT3G50690.1entrez:824233
Gene3D:3.80.10.10GeneID:824233Genevisible:Q9SCQ7Gramene:AT3G50690.1hmmpanther:PTHR11375HOGENOM:HOG000033932InParanoid:Q9SCQ7
InterPro:IPR001611InterPro:IPR032675KEGG:ath:AT3G50690ncoils:CoilOMA:FRMTNGHPaxDb:Q9SCQ7Pfam:PF14580
Pfam:Q9SCQ7Pfscan:PS51450PIR:T46146PRIDE:Q9SCQ7PRO:PR:Q9SCQ7PROSITE:PS51450ProteinModelPortal:Q9SCQ7
Proteomes:UP000006548RefSeq:NP_190638.1SMR:Q9SCQ7STRING:3702.AT3G50690.1SUPFAM:SSF52058TAIR:AT3G50690UniGene:At.842
UniProt:Q9SCQ7
Coordinates (TAIR10) chr3:-:18835271..18837097
Molecular Weight (calculated) 49567.60 Da
IEP (calculated) 3.48
GRAVY (calculated) -1.19
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEIWERAVE AALDGQTDRL ATRTLTLDGA VKCVQGRLPP PSVLEKFQNL QHLSVANIGV SSLEQFPRLG NLQKLILSDN RITVGLEFLV EAGLDSFCDL
101: DLSNNRIQFV EDLAPLAELK LVSLDLYECP VTRLKDYRSR VFGLIKTLKY LDKTDAEGNE RPESDDEDDE EDEEDEEEEE EGDEEDPGSG EIDGDERAEA
201: PRMSNGHSER VDGVVDVDED EESDAEDDES EQATGVNGTS YRANGFRLEA VNGEEVREDD GDDSESGEEE VGEDNDVVEV HEIEDSENEE DGVDDEEDDE
301: EDEEEEEVDN ADRGLGGSGS TSRLMNAGEI DGHEQGDDDE DGDGETGEDD QGVEDDGEFA DEDDDVEEED EESGEGYLVQ PVSQVEDHDA VGNDIEPINE
401: DNDPDEEEEV EDDLPIPDQS LASSSRPKRK RDDDDDGEDD DDDDEER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)