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AT3G50080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.980
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VIER F-box proteine 2
Curator
Summary (TAIR10)
Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,3, and 4. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes.
Computational
Description (TAIR10)
VIER F-box proteine 2 (VFB2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation, ubiquitin-dependent protein catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: SKP1/ASK1-interacting protein 2 (TAIR:AT5G67250.1); Has 4306 Blast hits to 2435 proteins in 203 species: Archae - 0; Bacteria - 23; Metazoa - 1627; Fungi - 317; Plants - 1918; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:BT030318EMBL:CP002686EnsemblPlants:AT3G50080EnsemblPlants:AT3G50080.1entrez:824170
ExpressionAtlas:A3KPF1Gene3D:3.80.10.10GeneID:824170Gramene:AT3G50080.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF481InterPro:IPR001611
InterPro:IPR001810InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT3G50080ncoils:CoilOMA:HCKVLEEPaxDb:A3KPF1
Pfam:PF00646Pfam:PF13516Pfam:Q9SN10PhylomeDB:A3KPF1PRIDE:A3KPF1ProteinModelPortal:A3KPF1RefSeq:NP_566928.1
SMART:SM00256SMART:SM00367SMR:A3KPF1STRING:3702.AT3G50080.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G50080
tair10-symbols:VFB2UniGene:At.35535UniProt:A3KPF1UniProt:Q9SN10
Coordinates (TAIR10) chr3:+:18572788..18574356
Molecular Weight (calculated) 57252.20 Da
IEP (calculated) 8.34
GRAVY (calculated) 0.05
Length 522 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQAPSSPAE PNVRDTSLCL WSPEFLDCES IGFEDGDYDF TANLPDDCLA HIFQFLSAGD RKRCSLVSKR WLLVDGQNRH RLSLDAKSEI LPFLPCIFNR
101: FDSVTKLALR CDRRSFSLSD EALFIVSIRC SNLIRVKLRG CREITDLGME SFARNCKSLR KLSCGSCTFG AKGINAMLEH CKVLEELSLK RIRGLHELAE
201: PIKLSLSASL RSVFLKELVN GQVFGSLVAT RTLKKVKIIR CLGNWDRVFE MNGNGNSSLT EIRLERLQVT DIGLFGISKC SNLETLHIVK TPDCSNLGLA
301: SVVERCKLLR KLHIDGWRVK RIGDQGLMSV AKHCLNLQEL VLIGVDATYM SLSAIASNCK KLERLALCGS GTIGDAEIGC IAEKCVTLRK FCIKGCLISD
401: VGVQALALGC PKLVKLKVKK CSLVTGEVRE WLRERRMTLV VSMDDDETNG VGLVDGGDQR VLETVVEEEA PPVIDGDGGL GVAGGGRLGL AILKTKLGLL
501: AGRNLVACTL RRWSQSEATS SI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)