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AT3G30300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.765
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G03810.1); Has 982 Blast hits to 802 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 982; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHGSeggNOG:ENOG410YCJ7EMBL:AK117160EMBL:BT008297EMBL:CP002686EnsemblPlants:AT3G30300EnsemblPlants:AT3G30300.1
entrez:822730GeneID:822730GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0016757Gramene:AT3G30300.1
hmmpanther:PTHR31741hmmpanther:PTHR31741:SF18HOGENOM:HOG000241197InterPro:IPR019378KEGG:00514+2.4.1.221KEGG:ath:AT3G30300OMA:VPECSCI
Pfam:PF10250PhylomeDB:Q8GZ81Proteomes:UP000006548RefSeq:NP_189649.2STRING:3702.AT3G30300.1TAIR:AT3G30300TMHMM:TMhelix
UniGene:At.36806unipathway:UPA00378UniProt:Q8GZ81
Coordinates (TAIR10) chr3:-:11921390..11924254
Molecular Weight (calculated) 76908.00 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.41
Length 677 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGEGKVFLK SRMKWIGLLG LVLSAFSLLV HFLLAGFTDD SISDYSIPVT IFSWRPIFDN PRFARHTPLY RRLWGPTRHV ETLLPDANPR GFHSDPPART
101: NGFVFVRIQG GFHEIRNSIP DVVAVSRLLN ATLVIPEIQS TTSSKGISSQ FKSFAYLYNE EHFMATIAND VRVVKTLPKN LKWARRKKQI PSFKVSYGSS
201: PYYYLHHVLP VLIKHSVVEL VVPHGGCLQA ILPSDLEEYQ RLRCRVAFHG LQFRKEVQEL STKVLQRLRP LGRPFIAYDP GMTREALAYH GCAELFQDVH
301: TELIQHKRAW MIKRGIVKGK LSVDSAEQRL AGLCPLMPEE VGILLRAYGY SWDTIIYVAG GEVFGGQRTL IPLHGMFENV VDRTSLSTSW ELAKMYGREA
401: KHNDIKKMTP PSIEVETKHD SLKSTRQRPQ PLPPPPARPK YYNIEGWWGW VAESDNEPES TVIELRTNAH KLLWEAIDYV VSVEADVFIS GFDRDGKGHP
501: SFASLVMGHR LYQSASAKTF RPDRKQIAML LEEIRDHMYE ANHTWITSVR KLLKRSILEG LMESSKRSKA FSFLSHPVPE CSCITRTHPV SNATNLGVTH
601: RCPQWVDGAV SERLKEYKNA EKEEDLDEED LSSSGLFFGH KESGGNNNGN NETVNSEANN KEEGQLEDQE ELEGSER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)