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AT3G23660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec23/Sec24 protein transport family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G14160.2); Has 1418 Blast hits to 1403 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 392; Plants - 312; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5047eggNOG:KOG1986EMBL:AB023036EMBL:BT002914EMBL:BT005123EMBL:CP002686EnsemblPlants:AT3G23660
EnsemblPlants:AT3G23660.1entrez:821946ExpressionAtlas:Q9LUG1Gene3D:3.40.20.10Gene3D:3.40.50.410GeneID:821946GO:GO:0006886
GO:GO:0006888GO:GO:0008270GO:GO:0030127Gramene:AT3G23660.1hmmpanther:PTHR11141HOGENOM:HOG000231690InterPro:IPR002035
InterPro:IPR006895InterPro:IPR006896InterPro:IPR006900InterPro:IPR007123InterPro:IPR012990InterPro:IPR029006Pfam:PF00626
Pfam:PF04810Pfam:PF04811Pfam:PF04815Pfam:PF08033PhylomeDB:Q9LUG1ProMEX:Q9LUG1Proteomes:UP000006548
Reactome:R-ATH-204005Reactome:R-ATH-5694530Reactome:R-ATH-983170RefSeq:NP_189008.1SMR:Q9LUG1STRING:3702.AT3G23660.2SUPFAM:SSF53300
SUPFAM:SSF81811SUPFAM:SSF81995SUPFAM:SSF82754SUPFAM:SSF82919TAIR:AT3G23660UniGene:At.37672UniProt:Q9LUG1
Coordinates (TAIR10) chr3:-:8513666..8517729
Molecular Weight (calculated) 84051.10 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.07
Length 765 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETANTDLE GIDGVRMTWN VWPHSKAEAS KCVIPLAACI SPIRRHADIP TLPYAPLRCR TCSAALNAYA QVDFTAKLWI CPFCYQRNHF PPHYHVISET
101: NLPGELYPQY TTVEYTLPPP VANGEGLVDP PVFVFVLDTC MIEEELDFAK SALKQAIGLL PENALVGFVS FGTQAHVHEL GFSEMSKVFV FKGDKEISKD
201: QILDQLGLGG SSRRGGSKGP QNGFPSSGLN RFLLPASECE FTLNSLLDEL QSDQWPVKPG HRSQRCTGVA LSVAAGLLGA CLPGTGARIV ALIGGPCTEG
301: PGTIVSKDLS DPVRSHKDLD KDAAPYYKKA VKFYDSIAKQ LVTQGHVLDL FASALDQVGV AEMKVAVERT GGLVVLSESF GHSVFKDSFK RVFEDGDQAL
401: GLCFNGTLEI CCSQDIKIQG AIGPCSSLEK KGASVADTVI GEGNTSAWRL CGLDKTTCLT IFFDISSSGS NTPGAANPQF YLQFLTSYQN PEGQTLLRVT
501: TVCRQWIDSA VSSEELVQGF DQETAAVVMA RLASLKMESE EGFDATRWLD RNLIRLCSKF GDYRKDDPAS FTLNPYFSLF PQFIFNLRRS QFVQVFNNSP
601: DETAYFCMLL NRENISNATV MIQPSLTTYS FNSPAEPALL DVASIAADRI LLLDAYFSVV VFHGMTIAQW RNMGYHHQPE HQAFAELLQA PQEDSQMIVR
701: ERFPVPRLVV CDQHGSQARF LLAKLNPSAT YNNANEMSTG SDVIFTDDVS LQVFFEHLQK LVVQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)