AT3G20010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G50410.1); Has 24758 Blast hits to 15202 proteins in 1867 species: Archae - 89; Bacteria - 7985; Metazoa - 5530; Fungi - 5269; Plants - 2318; Viruses - 151; Other Eukaryotes - 3416 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6971352..6976340 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115481.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.09 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1047 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSAIEISSG SDSDDEVPPQ PVWPQTRTRM DPTWLSRRPL PTVDSHARAE HTNQAPPNGA SSDTSRPGVS KPFTGNGNTV NSRISSGSGA DYVRLSSEQA 0101: LKRTLPPSFN SPPLPARSGT NNISNASGSR VGVDYERPLS QQALKRTLPP SFNPPPLPSR SGTNNIRNAG GSRFGADYSH PAVSAVGNKS TFGDHYSGAH 0201: AEIGIQRGVN GVRILPPSLT HGTSASVLHH AGSSDPMHRF GGGEDRNPDN DERLVYQAAL QVLNQPMTES DLPPGTLSVP LMRHQKIALA WMFQKETSSF 0301: NCPGGILADD QGLGKTVSTI ALILKQKIVS QLKSESSCKQ ETEALVLDAD DESDNAKHES GSHVKPELKV SSNSETSVLS ACGNDENDSS DMEKAEDEEA 0401: NSSTRAFQWK RPAAGTLIVC PASVVRQWAR ELDEKVSEES KLSVLVYHGS NRTKDPNELA EYDVVVTTYA IVTNEAPNKF LVDEDENDEK NTDRYGLASG 0501: FSNNKKRKVV VGASKKSKRR GRKSTNDTSS EPDCGPLGKV GWFRIVLDEA QTIKNYRTQM ARSCCTLRAK RRWCLSGTPI QNTIDDLYSY FRFLRYDPYA 0601: VYKSFYSTIK VPISRNSCQG YKKLQAVLRA IMLRRTKGTL LDGKPIINLP PKVVNLSQVD FSVAERSFYK KLEADSRSQF KAYADAGTLS QNYANILLLL 0701: LRLRQACDHP QLVKRYNSDP VGKVSEAAVR RLPREARSRL INRLESSSAI CYECNEPPEK PVVTLCGHIF CYECVLEYIT GDENTCPVPR CKQQLARDVV 0801: FSESSLRNCT SDDSGCSSSH DNGLDRSVFQ KRDFCSSKIK AVLDILQSLS QPDSPNSAQH GQMPSSSRPY DDDDVTIVEP MRLHSSSPSQ GAVKTIIFSQ 0901: WTGMLDLVEL RILESGIEFR RLDGTMSLAA RDRAVKEFSK KPDVKVMLMS LKAGNLGLNM VAACHVILLD LWWNPTTEDQ AIDRAHRIGQ TRPVTVTRIT 1001: IKDTVEDRIL KLQEEKRTMV ASAFGEEHGG SSATRLTVDD LKYLFMV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)